View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_58 (Length: 227)
Name: NF19271_low_58
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_58 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 10982646 - 10982431
Alignment:
| Q |
1 |
ttgaatccttcagttccaaagcagccttcatctcctcaaacaaaatcaccttgttcaacctttgttctccatacaatggccatgccaccataggcactcc |
100 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10982646 |
ttgaatccttcaattccaaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttgttctgcatacaatggccatgccaccataggcactcc |
10982547 |
T |
|
| Q |
101 |
ttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10982546 |
ttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccgatcgagtcatgctttaatattgcaccttgtggtgcccaatttctt |
10982447 |
T |
|
| Q |
201 |
accaccattccccttt |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
10982446 |
accaccattccccttt |
10982431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 10968696 - 10968478
Alignment:
| Q |
1 |
ttgaatccttcagttccaaagcagccttcatctcctcaaacaaaatcaccttgttcaacctttgttctccatacaatggccatgccaccataggcactcc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||| |
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|
| T |
10968696 |
ttgaatccttcagttccaaagcaaccttcatctcgtcaaccaaaatcaccttgttcagcctttgttctgcatataatggccacgccaccataggcactcc |
10968597 |
T |
|
| Q |
101 |
ttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttctt |
200 |
Q |
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| T |
10968596 |
ttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatattgcaccttgtggtgcccaatttctt |
10968497 |
T |
|
| Q |
201 |
accaccattcccctttgct |
219 |
Q |
| |
|
||||||||||| |||||| |
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| T |
10968496 |
gccaccattcccttttgct |
10968478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 11002865 - 11002665
Alignment:
| Q |
12 |
agttccaaagcagccttcatctcctcaaacaaaatcaccttgttcaacctttgttctccatacaatggccatgccaccataggcactccttcacatacag |
111 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||| |||||||||||||||||| ||||||| |||||||| | |||||||||||||||||| | || |
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| T |
11002865 |
agttccaaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatag |
11002766 |
T |
|
| Q |
112 |
cttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaatttcttaccaccattcc |
211 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||||||| || || || | ||||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
11002765 |
cttccaacactgagttccatccacagtgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattcc |
11002666 |
T |
|
| Q |
212 |
c |
212 |
Q |
| |
|
| |
|
|
| T |
11002665 |
c |
11002665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 59 - 212
Target Start/End: Complemental strand, 11019199 - 11019046
Alignment:
| Q |
59 |
cctttgttctccatacaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatc |
158 |
Q |
| |
|
|||||||||| | |||| |||||||| | ||| ||||| |||||||| | |||||||||||| ||||||||||||||||| ||||| |||||||| | |
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| T |
11019199 |
cctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacg |
11019100 |
T |
|
| Q |
159 |
gagtcatgctttaatatcgcaccttgtggtgcccaatttcttaccaccattccc |
212 |
Q |
| |
|
|||| ||| | ||||||||| ||||||| ||||||||||| || ||||||||| |
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|
| T |
11019099 |
gagttatgactcaatatcgcaacttgtggggcccaatttctcacaaccattccc |
11019046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 11079922 - 11079806
Alignment:
| Q |
96 |
actccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaat |
195 |
Q |
| |
|
|||||||| || | |||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||| ||| ||| | ||||||||||||||| | |
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| T |
11079922 |
actccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtggtgcccagt |
11079823 |
T |
|
| Q |
196 |
ttcttaccaccattccc |
212 |
Q |
| |
|
|||| || ||||||||| |
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|
| T |
11079822 |
ttctaacaaccattccc |
11079806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 11050315 - 11050235
Alignment:
| Q |
59 |
cctttgttctccatacaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatg |
139 |
Q |
| |
|
|||||||||| || |||| |||||||| | ||| ||||| |||||| | | |||||||||||| ||||||||||||||||| |
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|
| T |
11050315 |
cctttgttctgcaaacaaaggccatgcaatcattggcaccccttcataaatagcttccaacacggagttccatccacaatg |
11050235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 4493253 - 4493290
Alignment:
| Q |
123 |
gagttccatccacaatgtgtcacgaatccaccaatcga |
160 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||| |
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| T |
4493253 |
gagttccatccacaatgagtcaagaatccaccaatcga |
4493290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 23628117 - 23628149
Alignment:
| Q |
112 |
cttccaacaccgagttccatccacaatgtgtca |
144 |
Q |
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|||||||||||||||||||||||||||| |||| |
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|
| T |
23628117 |
cttccaacaccgagttccatccacaatgagtca |
23628149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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