View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_59 (Length: 226)
Name: NF19271_low_59
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_59 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 11661499 - 11661693
Alignment:
| Q |
15 |
ataggcattgaacaacagaaagaacataaacagaagatggaaaaattttggagcatgatctgtggggactgtcctactgagaatggaggaaagccttttt |
114 |
Q |
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| T |
11661499 |
ataggcattgaacaacagaaagaacataaaaagaagatggataaattttggagcatgatttgtggggactgtcctactgagaatggaggaaagccttttt |
11661598 |
T |
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| Q |
115 |
gttatgatgtaaaacttttaaaagatccatcctcatgcatcaaccatttgttggtaattttctttgatgtgttcttgttgattatattatcattc |
209 |
Q |
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| T |
11661599 |
gttatgatgtaaaacttttaaaagatccatcctcatgcatcaaccatttgttggtaattttctttgatgtgttcttgttgatcatattatcattc |
11661693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 11616713 - 11616853
Alignment:
| Q |
48 |
aagatggaaaaattttggagcatgatctgtggggactgtcctactg---agaatggaggaaagcctttttgttatgatgtaaaacttttaaaagatccat |
144 |
Q |
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| T |
11616713 |
aagatggaaaacttttggagcatgatttgtggagactgtggtaatgttgataatgaaggaaaacctttctgttatgatttagcacttttgaaagatcctt |
11616812 |
T |
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| Q |
145 |
cctcatgcatcaaccatttgttggtaattttctttgatgtg |
185 |
Q |
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| T |
11616813 |
cttcatgcatcaaccatgtgttggtcatttcatttgatgtg |
11616853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 11633522 - 11633398
Alignment:
| Q |
48 |
aagatggaaaaattttggagcatgatctgtggggactgtcctactg---agaatggaggaaagcctttttgttatgatgtaaaacttttaaaagatccat |
144 |
Q |
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| T |
11633522 |
aagatggaaaacttttggagcatgatttgtggagactgtggtaatgttgataatgaaggaaaacctttctgttatgatttagcacttttgaaagatcctt |
11633423 |
T |
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| Q |
145 |
cctcatgcatcaaccatttgttggt |
169 |
Q |
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| T |
11633422 |
cttcatgcatcaaccatgtgttggt |
11633398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 11111 - 11213
Alignment:
| Q |
94 |
agaatggaggaaagcctttttgttatgatgtaaaacttttaaaagatccatcctcatgcatcaaccatttgttggtaattttctttgatgtgttcttgtt |
193 |
Q |
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||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||| |||||| ||| || |||||||||||||| |
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| T |
11111 |
agaatggaggaaagcctttttgttatgatataaattttttgaaagatccttcctcatgcatcaaccatttgatggtaacttttttagatgtgttcttgtt |
11210 |
T |
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| Q |
194 |
gat |
196 |
Q |
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||| |
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| T |
11211 |
gat |
11213 |
T |
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