View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_64 (Length: 202)
Name: NF19271_low_64
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 7e-88; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 15126303 - 15126136
Alignment:
| Q |
18 |
atgagcactcacaagtagttcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcctccattacctagaatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15126303 |
atgagcactcacaagtagttcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcctccattacctagaatttg |
15126204 |
T |
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| Q |
118 |
agttcatcatattagttacattcagatgtaatataatagacatccaaataaaatactttaccaagata |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15126203 |
agttcatcatattagttacattcagatgtaatataatagacatccaaatgaaatactttaccaagata |
15126136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 14949073 - 14949239
Alignment:
| Q |
18 |
atgagcactcacaagtagttcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcctccattacctagaatttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14949073 |
atgagcactcacaagtagttcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcgtccattacctagaatttg |
14949172 |
T |
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| Q |
118 |
agttcatcatattagttacattcagatgtaatataatagacatccaaataaaatactttaccaagata |
185 |
Q |
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| T |
14949173 |
agttcatgatattag-tatgttcagaaggaatataatagacatccaaatgaaatactttaccaagata |
14949239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 5281836 - 5282004
Alignment:
| Q |
18 |
atgagcactcacaagtagttcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcctccattacctagaatttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
5281836 |
atgagcactcacaagtagttcaaaggctgttccagatgttaaaatattctcataactacctgattgaataactcttccaccctccattacctagaatttg |
5281935 |
T |
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| Q |
118 |
agttcatcatatt-agttacattcagatgtaatataatagacatccaaataaaatactttaccaagata |
185 |
Q |
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|||||||||| || | ||| ||||||| |||||||||| ||||| |||| |||||||||||||||||| |
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| T |
5281936 |
agttcatcatgttaaattatgttcagatataatataataaacatcaaaatgaaatactttaccaagata |
5282004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 5289842 - 5289942
Alignment:
| Q |
25 |
ctcacaagtagttcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcctccattacctagaatttgagttcat |
124 |
Q |
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||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
5289842 |
ctcacaagttgttcaaaggctgttccagctgtcaggagattctcataactacctgattgaataacttttccaccctccatgacctagaatttgagttcat |
5289941 |
T |
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| Q |
125 |
c |
125 |
Q |
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| |
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| T |
5289942 |
c |
5289942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 5307505 - 5307404
Alignment:
| Q |
26 |
tcacaagtagttcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcctccattacctagaatttgagttcatc |
125 |
Q |
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|||||||| ||||||||||| |||||| | | ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
5307505 |
tcacaagttgttcaaaggcttttccagttgtcaggagattctcataactacctgattgaataactcttccaccctccattacctagaatttgagttcatc |
5307406 |
T |
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| Q |
126 |
at |
127 |
Q |
| |
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|| |
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|
| T |
5307405 |
at |
5307404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 5314486 - 5314403
Alignment:
| Q |
37 |
tcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcctccattacctagaatttgagt |
120 |
Q |
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||||||| ||| |||| ||| | |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5314486 |
tcaaaggttgtcccagctttcaagagattctgataactgcccgattgaataacttttccatcctccattacctagaatttgagt |
5314403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 31525890 - 31525978
Alignment:
| Q |
26 |
tcacaagtagttcaaaggctgttccagattttaggagattctcataactacctgattgaataacttttccatcctccattacctagaat |
114 |
Q |
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|||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31525890 |
tcacaagttgttcaaaggctgtcccagctattaggagattctcataactacctgattgaataacttttccatcctccattacctagaat |
31525978 |
T |
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