View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_low_7 (Length: 547)

Name: NF19271_low_7
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_low_7
NF19271_low_7
[»] chr1 (4 HSPs)
chr1 (82-219)||(52140746-52140883)
chr1 (5-85)||(52140643-52140714)
chr1 (321-382)||(6923510-6923571)
chr1 (225-268)||(52140901-52140944)
[»] chr4 (2 HSPs)
chr4 (338-546)||(37615638-37615847)
chr4 (323-359)||(17558824-17558860)
[»] chr8 (4 HSPs)
chr8 (94-196)||(17524854-17524955)
chr8 (200-324)||(17524437-17524571)
chr8 (5-85)||(17525002-17525073)
chr8 (322-359)||(16367881-16367918)
[»] chr6 (1 HSPs)
chr6 (399-485)||(22083651-22083733)
[»] chr3 (2 HSPs)
chr3 (319-360)||(52130754-52130795)
chr3 (323-359)||(5561552-5561588)
[»] chr7 (1 HSPs)
chr7 (324-360)||(24763319-24763355)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 52140746 - 52140883
Alignment:
Q  82 tagtggaagatgtatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaactggaatgtatgaagtaccagtggccacggtattgct 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52140746 tagtggaagatgtatagaaaattgtaaaagtaagcttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct 52140845  T
Q  182 aatttaattcgatgtatttatgtacaaacagttgccac 219  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52140846 aatttaattcgatgtatttatgtacaaacagttgccac 52140883  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 52140643 - 52140714
Alignment:
Q  5 cagaagcttaagggtcactttggttgaagaagatgaaggagaagccatattgaaagataatgcattaacagagaggctagt 85  Q
    ||||||||||||||| |||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  52140643 cagaagcttaagggttactttggttgaagaaga---------agccatattgaaagataatgcattaacagagaggctagt 52140714  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 6923571 - 6923510
Alignment:
Q  321 taaactagattgtctacccgtgctgccgcatgggtcataatttgctaaaaatattagttgaa 382  Q
    |||||||||| |||||||||||| || ||| ||||||||  | |||||||||||||||||||    
T  6923571 taaactagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaatattagttgaa 6923510  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 52140901 - 52140944
Alignment:
Q  225 agcttgattttgagttctcttatcctcctctgcaattggccaac 268  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||    
T  52140901 agcttaattttgagttctcttaatctcctctgcaattggccaac 52140944  T

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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 338 - 546
Target Start/End: Original strand, 37615638 - 37615847
Alignment:
Q  338 ccgtgctgccgcatgggtcataatttgctaaaaatattagttgaaagcaatc---atatatccgataaaattaatatatagttactcaatgtaccaaatt 434  Q
    ||||||||| ||| |||||||||||| |||||| |||||||||||||| ||    |||||||| |||||||||||||||||||||||||| |||  ||||    
T  37615638 ccgtgctgctgcacgggtcataatttactaaaactattagttgaaagccattgttatatatccaataaaattaatatatagttactcaatatactgaatt 37615737  T
Q  435 gttctgactaaatgcgattaattaattgacgtatgatcatcttacataggttaaaaaattat--agatatgatagacatacataaccataattgtccggc 532  Q
    ||||||||  |||||||||||||    |||||| |||| ||||||||||||||||||| |    |||||||| ||||||||||| |||||||||| ||||    
T  37615738 gttctgacgtaatgcgattaatt----gacgtacgatcgtcttacataggttaaaaaaattcgaagatatgagagacatacatagccataattgttcggc 37615833  T
Q  533 ctttgctactccac 546  Q
    || || ||||||||    
T  37615834 ctatgttactccac 37615847  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 17558824 - 17558860
Alignment:
Q  323 aactagattgtctacccgtgctgccgcatgggtcata 359  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcata 17558860  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 17524955 - 17524854
Alignment:
Q  94 tatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaactggaatgtatgaagtaccagtggccacggtattgctaatttaattcga 193  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||    
T  17524955 tatagaaaattgtaaaagtaactt-ggtatttattacttagagattggaaattggaatgtatgaagtcctactggccacggtattgctaatttaattcga 17524857  T
Q  194 tgt 196  Q
    |||    
T  17524856 tgt 17524854  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 200 - 324
Target Start/End: Complemental strand, 17524571 - 17524437
Alignment:
Q  200 tatgtacaaacagttgccacttacgag---------cttgattttgagttctcttatcctcctctgcaattggccaa-catttgagcaagagaaacttgg 289  Q
    |||||||||||||||||||||||||||         ||| ||||||||||||||||  ||||||||||||||||||| |||| |||||||||||||||||    
T  17524571 tatgtacaaacagttgccacttacgagtaattaaagcttaattttgagttctcttaatctcctctgcaattggccaaacattggagcaagagaaacttgg 17524472  T
Q  290 tagaataccgcgatggttcacacaaatttgttaaa 324  Q
    |||| |||||||||| ||||||||||||| |||||    
T  17524471 tagagtaccgcgatgtttcacacaaatttcttaaa 17524437  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 17525073 - 17525002
Alignment:
Q  5 cagaagcttaagggtcactttggttgaagaagatgaaggagaagccatattgaaagataatgcattaacagagaggctagt 85  Q
    ||||||| |||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  17525073 cagaagcctaagggtcactttggttgaagaaga---------agccatattgaaagataatgcattaacagagaggctagt 17525002  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 16367918 - 16367881
Alignment:
Q  322 aaactagattgtctacccgtgctgccgcatgggtcata 359  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  16367918 aaactagatcgtctacccgtgctgccgcacgggtcata 16367881  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 22083733 - 22083651
Alignment:
Q  399 ataaaattaatatatagttactcaatgtaccaaattgttctgactaaatgcgattaattaattgacgtatgatcatcttacataggt 485  Q
    |||||||||| |||||||||||||||||||  ||||||||||||  |||||||||    |||| |||||||||| ||||||||||||    
T  22083733 ataaaattaagatatagttactcaatgtactgaattgttctgacgtaatgcgatt----aattcacgtatgatcgtcttacataggt 22083651  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 52130795 - 52130754
Alignment:
Q  319 gttaaactagattgtctacccgtgctgccgcatgggtcataa 360  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  52130795 gttagactagattgtctacccgtgctgccgcacgggtcataa 52130754  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 5561552 - 5561588
Alignment:
Q  323 aactagattgtctacccgtgctgccgcatgggtcata 359  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  5561552 aactagatcgtctacccgtgctgccgcacgggtcata 5561588  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 24763355 - 24763319
Alignment:
Q  324 actagattgtctacccgtgctgccgcatgggtcataa 360  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24763355 actagattgtctacccgtgctgccgcacgggtcataa 24763319  T

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