View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19272_high_12 (Length: 325)
Name: NF19272_high_12
Description: NF19272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19272_high_12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 61 - 325
Target Start/End: Complemental strand, 41705399 - 41705136
Alignment:
| Q |
61 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagtgtgttagaggt |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41705399 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagtgtgttagaggt |
41705300 |
T |
|
| Q |
161 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaaca--gtatttgnnnnnn |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41705299 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggtatttg-ttttt |
41705201 |
T |
|
| Q |
259 |
nngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtgtga |
325 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705200 |
ttgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtggtgtgtga |
41705136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University