View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19272_high_13 (Length: 313)

Name: NF19272_high_13
Description: NF19272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19272_high_13
NF19272_high_13
[»] chr7 (12 HSPs)
chr7 (131-290)||(36221990-36222144)
chr7 (131-288)||(36217999-36218151)
chr7 (137-288)||(35938858-35939004)
chr7 (1-66)||(36221861-36221926)
chr7 (157-288)||(32727098-32727224)
chr7 (140-288)||(35976975-35977118)
chr7 (140-288)||(35998387-35998530)
chr7 (157-288)||(35946312-35946438)
chr7 (140-288)||(35951951-35952094)
chr7 (137-269)||(35981560-35981687)
chr7 (137-269)||(36002972-36003099)
chr7 (1-65)||(36217870-36217934)
[»] chr1 (2 HSPs)
chr1 (140-287)||(18125241-18125383)
chr1 (216-288)||(18117587-18117659)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 131 - 290
Target Start/End: Original strand, 36221990 - 36222144
Alignment:
Q  131 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||     |||||||||||||||||||||||||||||||    
T  36221990 tgtgctggagttccgctggctgtcaaaacattaggaagttctctgttatcaaaatttgatttaa-----ataagtggatattcgtaagagaccatgagat 36222084  T
Q  231 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatga 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222085 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatga 36222144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 131 - 288
Target Start/End: Original strand, 36217999 - 36218151
Alignment:
Q  131 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagat 230  Q
    ||||||||||||||||||||||| | |||  ||||||||||||| |||||||||||||||||| ||     |||||| |||| |||||||||||||||||    
T  36217999 tgtgctggagttccgctggctgtgagaacggtaggaagttctctgttctcaaaatttgatttagat-----aagtggttatttgtaagagaccatgagat 36218093  T
Q  231 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 288  Q
     ||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  36218094 atggaatttagaacagaagaaagatgatattttacctgctttaaaattaagctatgat 36218151  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 137 - 288
Target Start/End: Complemental strand, 35939004 - 35938858
Alignment:
Q  137 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 236  Q
    |||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||     ||||||  ||| ||||||||   |||||| |||||    
T  35939004 ggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaat-----aagtgggaatttgtaagagattctgagatatggaa 35938910  T
Q  237 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 288  Q
     |||||||| ||| ||  |||||||||||||||| |||||||||||||||||    
T  35938909 tttagaacagaagcaaaatgatattttacctgcactaaaattaagctatgat 35938858  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36221861 - 36221926
Alignment:
Q  1 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcattt 66  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36221861 ccttcgtatattttggaaggtctttcgcaagagagctgtttgtatttgtttgtgaaatgggcattt 36221926  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 288
Target Start/End: Complemental strand, 32727224 - 32727098
Alignment:
Q  157 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 256  Q
    ||||||| |||||||  |||||||||||| ||||||||||     ||||||||||| || |||||   |||||| ||||| |||||||| ||||||| ||    
T  32727224 aacattacgaagttccttattctcaaaatatgatttaaat-----aagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatg 32727130  T
Q  257 atattttacctgcattaaaattaagctatgat 288  Q
    |||||||||||||||| || ||||||||||||    
T  32727129 atattttacctgcattgaagttaagctatgat 32727098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 288
Target Start/End: Complemental strand, 35977118 - 35976975
Alignment:
Q  140 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 239  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| ||    
T  35977118 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35977024  T
Q  240 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 288  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||    
T  35977023 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgat 35976975  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 288
Target Start/End: Complemental strand, 35998530 - 35998387
Alignment:
Q  140 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 239  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| ||    
T  35998530 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35998436  T
Q  240 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 288  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||    
T  35998435 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgat 35998387  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 288
Target Start/End: Complemental strand, 35946438 - 35946312
Alignment:
Q  157 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 256  Q
    |||||||| ||||||||| |||||||| |||||| ||| |     ||||||  |||||| || |||  |||||| ||||| |||||||||||||||| ||    
T  35946438 aacattagcaagttctctcttctcaaactttgatataagt-----aagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatg 35946344  T
Q  257 atattttacctgcattaaaattaagctatgat 288  Q
    |||| ||||||||  |||||||||| ||||||    
T  35946343 atatcttacctgcgctaaaattaagttatgat 35946312  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 288
Target Start/End: Complemental strand, 35952094 - 35951951
Alignment:
Q  140 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 239  Q
    ||||| |||||||| ||| |||| |||||||| || |||||||| || ||||||| |     ||||||  ||| || ||||||  ||  |||||||| ||    
T  35952094 gttccactggctgtgaaatcattgggaagttccctcttctcaaacttcgatttaagt-----aagtgggaatttgtcagagactctgctatttggaattt 35952000  T
Q  240 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 288  Q
    ||||||| |||||| |||||||||||||||  | |||||||||||||||    
T  35951999 agaacaacagaaagatgatattttacctgccctgaaattaagctatgat 35951951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 269
Target Start/End: Complemental strand, 35981687 - 35981560
Alignment:
Q  137 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 236  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||     |||||||||| |||| ||||| ||   |||| | |||||    
T  35981687 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgattt-----aaataagtgggtatttgtaagggattctgagttatggaa 35981593  T
Q  237 cttagaacaaaagaaaggtgatattttacctgc 269  Q
      |||| || ||||||| |||||||||||||||    
T  35981592 tctagagcagaagaaagatgatattttacctgc 35981560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 269
Target Start/End: Complemental strand, 36003099 - 36002972
Alignment:
Q  137 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 236  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||     |||||||||| |||| ||||| ||   |||| | |||||    
T  36003099 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgattt-----aaataagtgggtatttgtaagggattctgagttatggaa 36003005  T
Q  237 cttagaacaaaagaaaggtgatattttacctgc 269  Q
      |||| || ||||||| |||||||||||||||    
T  36003004 tctagagcagaagaaagatgatattttacctgc 36002972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36217870 - 36217934
Alignment:
Q  1 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcatt 65  Q
    ||||||||| |||||||||||||||||  ||||   | ||||| | |||||||||||||||||||    
T  36217870 ccttcgtatgttttggaaggtctttcgttagaggattgtttgtctctgtttgtgaaatgggcatt 36217934  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 287
Target Start/End: Complemental strand, 18125383 - 18125241
Alignment:
Q  140 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 239  Q
    ||||| || ||||| | ||||||||||||||| ||||||||||||||||||||||||  |     |||||||| ||||||||   |||| | ||||| ||    
T  18125383 gttccactagctgttagaacattaggaagttccctattctcaaaatttgatttaaataca-----tggatatttgtaagagattctgagctgtggaattt 18125289  T
Q  240 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatga 287  Q
    | ||||  | |||| |||||||||||||||| ||||||| ||||||||    
T  18125288 aaaacagcaaaaagatgatattttacctgcactaaaattgagctatga 18125241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 18117659 - 18117587
Alignment:
Q  216 aagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 288  Q
    |||||||  |||||| ||||  |||||||||||| ||  |||||||||||||||| |||||||||||||||||    
T  18117659 aagagactctgagatgtggactttagaacaaaagcaaaatgatattttacctgcactaaaattaagctatgat 18117587  T

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