View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19272_high_1_N (Length: 413)
Name: NF19272_high_1_N
Description: NF19272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19272_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 89 - 349
Target Start/End: Complemental strand, 2018587 - 2018327
Alignment:
| Q |
89 |
aacctgtggaagtcggaaaagtagttgtcatcaaggtcgaaggaacggagggagagccagagtggtttccatctctttgacagaaggctagtagcaacag |
188 |
Q |
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| T |
2018587 |
aacctgtggaagtcggaaaagtagttgtcatcaaggtcgaaggaacggaaggagagccagagtggtttccatctctttgacagaaggctagtagcaacag |
2018488 |
T |
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| Q |
189 |
catccctcgtcggaaggaacgacagaatgtgatacagaacgtcgtcaggtagtgattccatggttgttcttgttcacagcgaggtataagtgtgaaccct |
288 |
Q |
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| T |
2018487 |
catccctcgtcggaaggaacgacagaatgtgacacagaacgtcgtcaggtagtgattccatggttgttcttgttcacagcgaggtataagtgtgaaccct |
2018388 |
T |
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| Q |
289 |
agttttatttttgtagggttaatattgtgcaagggttaattccgtaatctttggacgagac |
349 |
Q |
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| T |
2018387 |
agttttatttttgtagggttaatagtgtgcaagggttaattccgtaatctttggacgagac |
2018327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 2005700 - 2005585
Alignment:
| Q |
125 |
tcgaaggaacggagggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcggaaggaacgacagaatgtgataca |
224 |
Q |
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| T |
2005700 |
tcgaaggaacggagtgagagccaaagtggtttccatctctttgacagaaggctagtagcagacgcatctctcgtcggaaggcatgacagaatgtgacatc |
2005601 |
T |
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| Q |
225 |
gaacgtcgtcaggtag |
240 |
Q |
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| T |
2005600 |
gaagatcgtcaggtag |
2005585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 2011871 - 2011762
Alignment:
| Q |
128 |
aaggaacggagggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcggaaggaacgacagaatgtgatacagaa |
227 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| ||||| || |||||| ||||||| ||||| |||||||| || ||||||||| || ||| |
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| T |
2011871 |
aaggaacggagcgagagccaaagtggtttccatctctttgatagaagacttgtagcagcagcatctctcgttggaaggaatgagagaatgtgacaccgaa |
2011772 |
T |
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| Q |
228 |
cgtcgtcagg |
237 |
Q |
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| T |
2011771 |
catcgtcagg |
2011762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 913229 - 913263
Alignment:
| Q |
30 |
gttgttatatactatcatcaatgcctttcttcttg |
64 |
Q |
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| T |
913229 |
gttgttatatactatcatcaatgcctttcttcttg |
913263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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