View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19272_high_2 (Length: 413)
Name: NF19272_high_2
Description: NF19272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19272_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 29 - 394
Target Start/End: Complemental strand, 7424139 - 7423775
Alignment:
| Q |
29 |
attcagcttgttaataaacttcactatcaatgaatggtttaaaataaaaataaattgaatttaacttacatatcaaacagttattgatcgaataatattt |
128 |
Q |
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| T |
7424139 |
attcagctggttaataaacttcactatcaatgaatggtttaaaataaaaataaattgagtttaacttacatatcaaacagttattgatcgaataatattt |
7424040 |
T |
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| Q |
129 |
atctcacgatgaaactctatattaccaaagttctcttcacctataaatcaaaagtttaaaacaaaatagaattggattgtataagtaaagtacggatgag |
228 |
Q |
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| T |
7424039 |
atctcacgatcaaactctacattaccaaagttctcttcacctataaatcaaaagtttaaaataaaatagaattggattgtata-gtaaagtacggatgag |
7423941 |
T |
|
| Q |
229 |
agaacgtgcacttttgactcctgttatttggtctgtctgcttatattattattggaaccaattattagtggtcttaaataaattactacatttttggggc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423940 |
agaacgtgcacttttgactcctgttatttggtctgtctgcttatattattattggaaccaattattagtggtcttaaataaattactacatttttggggc |
7423841 |
T |
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| Q |
329 |
gcttcacgtgctacatgaataattaaccatagactttttattatttcatctcattgtgatgatgtc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| |
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| T |
7423840 |
gcttcacgtgctacatgaataattaaccatagactttttattatctcatttcattgttatgatgtc |
7423775 |
T |
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