View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19272_high_5 (Length: 351)
Name: NF19272_high_5
Description: NF19272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19272_high_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 351
Target Start/End: Original strand, 2802385 - 2802729
Alignment:
| Q |
7 |
gaaccaaaggccataatcactcaattatataatagacaacatcacaatcaccaatctataatctttgcaaggtgatttaaaaaatgtcattgttcttgtt |
106 |
Q |
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| T |
2802385 |
gaaccaaaggccataatcactcaattatataatagacaacatcacaatcaccaatctataatctttgcaaggtgatttaaaaaatgtcattgttcttgtt |
2802484 |
T |
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| Q |
107 |
catcttcaaaacttgggtggaaatattttaacattaggatatcataaagttatgaatataaaaagaaaaagtatgtgaaagaatgaataatatgatttga |
206 |
Q |
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| T |
2802485 |
catcttcaaaacttgggtggaaatattttaacattaggatatcataaagttatgaatataaaaagaaaaattatgtgaaagaatgaataatatgatttga |
2802584 |
T |
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| Q |
207 |
attttgataacacttactatagcattggcatgcaagcaccttgtacattagattaggtgattctctatcataaacagaaaatagacaatatattaggtgt |
306 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2802585 |
attttgataacacttactatagcattggcgtgcaagcaccttttacattagattaggtgattctctatcataaacagaaaatagacaatatattaggtgt |
2802684 |
T |
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| Q |
307 |
agccgtatgctagagttgtgctagatttgaccttaggtacaaaat |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2802685 |
agccgtatgctagagttgtgctagatttgaccttaggtacaaaat |
2802729 |
T |
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