View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19272_high_6 (Length: 350)
Name: NF19272_high_6
Description: NF19272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19272_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 6942596 - 6942439
Alignment:
| Q |
29 |
accaaatatcatgtgttcattatttgcgtttactgtttctttaannnnnnnnnnnnngtaccagtttgctgttctaacatacttatgggtaacatgccat |
128 |
Q |
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| T |
6942596 |
accaaacatcgtgtgttcattatttgcgtttactgtttctttaattttttgatttttgaaccagtttgctgttctaacatacttatgggtaacatgccat |
6942497 |
T |
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| Q |
129 |
gttaacattggtagggaaaccaatgtaaaatgttacattcctcttaaatgtttttctt |
186 |
Q |
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| T |
6942496 |
gttaacattggtagggaaaccaatgtaaactgttacattcctcttaaatgtttttctt |
6942439 |
T |
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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 6788244 - 6788323
Alignment:
| Q |
172 |
ttaaatgtttttcttcgctctattgttctctaattatgttg----ttgtaatcatctctattcagt-ttacaaatcttgt |
246 |
Q |
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|||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||| |
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| T |
6788244 |
ttaaatctttttcttcgatctattgttctctaattgtgttgtaaattgtaatcatctctatccagtaatacaaatcttgt |
6788323 |
T |
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