View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19272_low_2 (Length: 633)

Name: NF19272_low_2
Description: NF19272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19272_low_2
NF19272_low_2
[»] chr6 (3 HSPs)
chr6 (21-516)||(5092061-5092547)
chr6 (537-633)||(5091977-5092073)
chr6 (264-324)||(3639120-3639181)
[»] chr1 (3 HSPs)
chr1 (260-326)||(16306141-16306206)
chr1 (259-324)||(50109056-50109122)
chr1 (261-324)||(23473769-23473833)
[»] chr5 (5 HSPs)
chr5 (260-324)||(8961655-8961720)
chr5 (260-324)||(30699525-30699590)
chr5 (275-324)||(2308646-2308695)
chr5 (331-376)||(21520833-21520878)
chr5 (331-376)||(21531399-21531444)
[»] chr2 (3 HSPs)
chr2 (260-324)||(38022980-38023045)
chr2 (318-379)||(18052596-18052657)
chr2 (331-376)||(8851703-8851748)
[»] chr8 (3 HSPs)
chr8 (260-324)||(15820089-15820154)
chr8 (264-324)||(27325071-27325132)
chr8 (331-376)||(37804257-37804302)
[»] chr3 (1 HSPs)
chr3 (260-323)||(42108295-42108359)
[»] chr7 (1 HSPs)
chr7 (259-324)||(29428917-29428983)
[»] chr4 (2 HSPs)
chr4 (584-622)||(44104257-44104295)
chr4 (275-324)||(44104494-44104543)


Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 21 - 516
Target Start/End: Complemental strand, 5092547 - 5092061
Alignment:
Q  21 ctaacatttccttcttccctactaaattaattactaacattttcctatnnnnnnncaacactgcaatgatccgtggtcaatttaatttacattccagcac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||| ||||    
T  5092547 ctaacatttccttcttccctactaaattaattactaacattttcctataaaaaaacaacactgcaatgatccgtggtcaatttaatttacgttccggcac 5092448  T
Q  121 accaaaaattctagaggaaactgagaccaagagtagtttttaaacacccatgctcctcaacccaccaaaataacttttaaggatttgtttggattgacga 220  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  5092447 accaaaaattctagaggaaactgagaccaatagtagtttttaaacacccatgctcctcaacccaccaaaatgacttttaaggatttgtttggatagacga 5092348  T
Q  221 aatagggtggaatggagtggtatgattgtatgaagtgttgttccattgtttggatttttaaaaatgagtggaatggagtggtatatgatgaaatccattc 320  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5092347 aatagggtggaatggagtggtatga--------agtgttgttccattgtttggatttttaaaaatgagtggaatggagtggtatatgatgaaatccattc 5092256  T
Q  321 catcatactttcttatttttcttcccctccaatttggggtgtatgagatggaatcaagccatataattaactaattacatttttaccccagttttatctt 420  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  5092255 catcatcctttcttatttttcttcccctccaatttggggtgtatgagatggaatcaagccatataattagctaattacatttttaccccatttttatctt 5092156  T
Q  421 ttacatcaaaccctgtattctgcaactcctgtttcttcaacttcataccagtttcttatacattgatggattaatttattgactagtgttatctaa 516  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5092155 ttacatc-aaccctgtattctgcaactcctgtttcttcaacttcataccagtttcttatacattgatggattaatttattgactagtgttatctaa 5092061  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 537 - 633
Target Start/End: Complemental strand, 5092073 - 5091977
Alignment:
Q  537 tagtgttatctaattttatcatcacaaattaatttccatatttatttatttatattaaactaaattaatccttactcctactattcacgaggttcat 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5092073 tagtgttatctaattttatcatcacaaattaatttccatatttatttatttatattaaactaaattaatccttactcctactattcacgaggttcat 5091977  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 3639120 - 3639181
Alignment:
Q  264 cattgtttggatttttaaaa-atgagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  3639120 cattgtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatc 3639181  T

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Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 16306206 - 16306141
Alignment:
Q  260 gttccattgtttggatttttaaaaatgagtggaatggagtggtatatgatgaaatccattccatcat 326  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  16306206 gttccattgtttggattta-aaaaatgagtggaatggagtggtatatgatggaatccattccatcat 16306141  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 50109122 - 50109056
Alignment:
Q  259 tgttccattgtttggatttttaa-aaatgagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    ||||||||||||||||||| ||| |||||| |||| |||| ||| | |||||| |||||||||||||    
T  50109122 tgttccattgtttggatttgtaagaaatgaatggagtggaatggaacatgatggaatccattccatc 50109056  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 23473769 - 23473833
Alignment:
Q  261 ttccattgtttggatttttaaaaat-gagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    ||||||||||||||| | ||||||| || ||||||||| ||| | |||||| |||||||||||||    
T  23473769 ttccattgtttggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattccatc 23473833  T

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Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 8961655 - 8961720
Alignment:
Q  260 gttccattgtttggatttttaaaa-atgagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  8961655 gttccattgtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatc 8961720  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 30699525 - 30699590
Alignment:
Q  260 gttccattgtttggatttttaaaa-atgagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  30699525 gttccattgtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatc 30699590  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 2308695 - 2308646
Alignment:
Q  275 tttttaaaaatgagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  2308695 tttttaaaaatgaatggaatggagtggtatatgatgggatccattccatc 2308646  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 21520833 - 21520878
Alignment:
Q  331 tcttatttttcttcccctccaatttggggtgtatgagatggaatca 376  Q
    ||||||||||||||||||||||||| ||  ||||| ||||||||||    
T  21520833 tcttatttttcttcccctccaatttaggaggtatgggatggaatca 21520878  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 21531399 - 21531444
Alignment:
Q  331 tcttatttttcttcccctccaatttggggtgtatgagatggaatca 376  Q
    ||||||||||||||||||||||||| ||  ||||| ||||||||||    
T  21531399 tcttatttttcttcccctccaatttaggaggtatgggatggaatca 21531444  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 38023045 - 38022980
Alignment:
Q  260 gttccattgtttggatttttaaaaa-tgagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  38023045 gttccattgtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatc 38022980  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 18052657 - 18052596
Alignment:
Q  318 ttccatcatactttcttatttttcttcccctccaatttggggtgtatgagatggaatcaagc 379  Q
    |||||||||  | |||||||||||||||   |||||||||||||||||||||||||| ||||    
T  18052657 ttccatcattttctcttatttttcttccatcccaatttggggtgtatgagatggaatgaagc 18052596  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 8851703 - 8851748
Alignment:
Q  331 tcttatttttcttcccctccaatttggggtgtatgagatggaatca 376  Q
    ||||||||||||||||||||||||||||  ||||  ||||||||||    
T  8851703 tcttatttttcttcccctccaatttgggaggtattggatggaatca 8851748  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 15820089 - 15820154
Alignment:
Q  260 gttccattgtttggatttttaaaa-atgagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||    
T  15820089 gttccattgtttggatatttaaaaaatgagtggaatggagtggtataggatgtaatccattccatc 15820154  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 27325071 - 27325132
Alignment:
Q  264 cattgtttggatttttaaaa-atgagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  27325071 cattgtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatc 27325132  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 37804257 - 37804302
Alignment:
Q  331 tcttatttttcttcccctccaatttggggtgtatgagatggaatca 376  Q
    ||||||||||||||||||||||||||||  ||||  ||||||||||    
T  37804257 tcttatttttcttcccctccaatttgggaggtattggatggaatca 37804302  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 42108359 - 42108295
Alignment:
Q  260 gttccattgtttggatttttaaaaa-tgagtggaatggagtggtatatgatgaaatccattccat 323  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||| |||||| |||| |||||||    
T  42108359 gttccattgtttggatatttaaaaaatgagtggaatggaatggtacatgatggaatctattccat 42108295  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 29428917 - 29428983
Alignment:
Q  259 tgttccattgtttggattt-ttaaaaatgagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    ||||||||||||||||||| | |||||||| ||||||||| ||  | |||||| |||||||||||||    
T  29428917 tgttccattgtttggatttgtaaaaaatgaatggaatggaatgaaacatgatggaatccattccatc 29428983  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 622
Target Start/End: Complemental strand, 44104295 - 44104257
Alignment:
Q  584 atttatattaaactaaattaatccttactcctactattc 622  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  44104295 atttatatcaaactaaattaatccttactcatactattc 44104257  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 44104543 - 44104494
Alignment:
Q  275 tttttaaaaatgagtggaatggagtggtatatgatgaaatccattccatc 324  Q
    |||| |||||| |||||||| ||||| |||||||||||||||||| ||||    
T  44104543 ttttgaaaaattagtggaatagagtgatatatgatgaaatccatttcatc 44104494  T

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