View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19273_high_1 (Length: 661)

Name: NF19273_high_1
Description: NF19273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19273_high_1
NF19273_high_1
[»] chr4 (2 HSPs)
chr4 (212-652)||(48904565-48905005)
chr4 (17-178)||(48904370-48904531)
[»] chr8 (9 HSPs)
chr8 (434-652)||(10769455-10769669)
chr8 (446-652)||(2051941-2052144)
chr8 (433-606)||(1948010-1948179)
chr8 (456-652)||(2029808-2030001)
chr8 (542-652)||(2034726-2034836)
chr8 (538-650)||(2038806-2038918)
chr8 (525-606)||(2048093-2048174)
chr8 (542-652)||(2059002-2059112)
chr8 (446-652)||(2055798-2056004)
[»] chr2 (3 HSPs)
chr2 (543-594)||(28782875-28782926)
chr2 (539-597)||(28734918-28734976)
chr2 (539-601)||(28742051-28742113)
[»] chr1 (1 HSPs)
chr1 (542-585)||(16441760-16441803)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 212 - 652
Target Start/End: Original strand, 48904565 - 48905005
Alignment:
Q  212 tattgggagaaactcatgtaaatctcagattttgaaatgattgtaagtggtgaaaatcacatgaacttcactcaataaattcacccaataaaagagagtg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48904565 tattgggagaaactcatgtaaatctcagattttgaaatgattgtaagtggtgaaaatcacatgaacttcactcaataaattcacccaataaaagagagtg 48904664  T
Q  312 agttttagagttaatgttagaaaataaagtgttatgagcatttctctttaatacataacacaatcatgtggaaccaatgactaactacaccaccacaaac 411  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48904665 agtgttagagttaatgttagaaaataaagtgttatgagcatttctctttaatacataacacaatcatgtggaaccgatgactaactacaccaccacaaac 48904764  T
Q  412 acaccaatggaattttatgagctattttttctctccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgct 511  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48904765 acaccaatggaactttatgagctattttttccctccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgct 48904864  T
Q  512 ggagagtagactgcatagtctccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggata 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48904865 ggagagtagactgcatagtctccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggata 48904964  T
Q  612 atttatgaccattgtagaaaaagcatgcagcagatattctt 652  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48904965 atttatgaccattgtagaaaaagcatgcagcagatattctt 48905005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 48904370 - 48904531
Alignment:
Q  17 cataaacaccatttagctccttaaaaatcttagcaaggaaactcaatggaataaaatctggtgatgggaaaaaaggtttaccacaaataaattggaaata 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48904370 cataaacaccatttagctccttaaaaatcttagcaagaaaactcaatggaataaaatctggtgatgggaaaaaaggtttaccacaaataaattggaaata 48904469  T
Q  117 aatcagcagcaccaacggtaatcagaaatcccttatttaatacataaagagtgttatgacca 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48904470 aatcagcagcaccaacggtaatcagaaatcccttatttaatacataaatagtgttatgacca 48904531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 434 - 652
Target Start/End: Complemental strand, 10769669 - 10769455
Alignment:
Q  434 tattttttctctccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctc 533  Q
    |||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||||| | |||||| ||||||| |   | | ||| || |||||||      
T  10769669 tattttttct-tccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcttc---aaaataggctacatagtcag 10769574  T
Q  534 caattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaa 633  Q
    ||| || ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |  |||||||  || |||||||    
T  10769573 caactgaggtttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctatgaccggtgcagaaaaa 10769474  T
Q  634 gcatgcagcagatattctt 652  Q
     |||||| |||||||||||    
T  10769473 acatgcaacagatattctt 10769455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 446 - 652
Target Start/End: Complemental strand, 2052144 - 2051941
Alignment:
Q  446 ccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctccaattgtggttt 545  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||| | |||||| |||||||    || ||||| || |||| ||  |||  |  ||||    
T  2052144 ccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgctc---gaaagtaggctacataatcagcaacagaagttt 2052048  T
Q  546 ctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaagcatgcagcaga 645  Q
    ||||||||||||||||||||||||| ||||  |||||||| ||||||||||||||| |||| |||  |||| |  |  || |||||||||||||| | ||    
T  2052047 ctctgtatttgggaggattgtcttctgatagcagttccttcataggtccatagagctttgaagatgctttaagtgctgtggagaaaaagcatgcaacgga 2051948  T
Q  646 tattctt 652  Q
    |||||||    
T  2051947 tattctt 2051941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 433 - 606
Target Start/End: Original strand, 1948010 - 1948179
Alignment:
Q  433 ctattttttctctccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtct 532  Q
    ||||||||||| |||||| ||| |||||||||| |||||||||| |||| ||||||||| | |||||| |||||||     | ||||| ||||||| ||     
T  1948010 ctattttttct-tccacactgcctagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcttt---aaagtaggctgcataatca 1948105  T
Q  533 ccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttga 606  Q
     ||| |||||||||||| ||||||| |||||| | ||| |||||||||||||| ||||||||||||||| ||||    
T  1948106 gcaactgtggtttctctatatttggaaggattcttttctgataatagttccttcataggtccatagagctttga 1948179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 456 - 652
Target Start/End: Complemental strand, 2030001 - 2029808
Alignment:
Q  456 tagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctccaattgtggtttctctgtattt 555  Q
    |||||||||| |||||||||| |||| ||||||||| | |||||| ||||||      | ||||| ||||| | ||  ||| ||||||||||||||||||    
T  2030001 tagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcatt---aaagtaggctgcaaaatcagcaactgtggtttctctgtattt 2029905  T
Q  556 gggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaagcatgcagcagatattctt 652  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||||| |||| |||    || | ||  || |||||||||||||| |||||||||||    
T  2029904 gggaggattgttttctgataatagttccttcataggtccatagagctttgacgatggcctaaggcctgtggagaaaaagcatgcaacagatattctt 2029808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 542 - 652
Target Start/End: Complemental strand, 2034836 - 2034726
Alignment:
Q  542 gtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaagcatgcag 641  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |  ||  |||  || |||||||||||||      
T  2034836 gtttctctgtatttaggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctaatacctgtgcagaaaaagcatgcca 2034737  T
Q  642 cagatattctt 652  Q
    |||||||||||    
T  2034736 cagatattctt 2034726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 538 - 650
Target Start/End: Complemental strand, 2038918 - 2038806
Alignment:
Q  538 tgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaagcat 637  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||| |||||||| |   ||||||  || |||||||||||    
T  2038918 tgtggtttctctgtatttaggaggattgtcttctgataatagatcctttattggtccatagagctttgaggatgaccaatgacctgtggagaaaaagcat 2038819  T
Q  638 gcagcagatattc 650  Q
    ||  |||||||||    
T  2038818 gctacagatattc 2038806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 525 - 606
Target Start/End: Complemental strand, 2048174 - 2048093
Alignment:
Q  525 catagtctccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttga 606  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| ||||    
T  2048174 catagtctgcaactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttga 2048093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 542 - 652
Target Start/End: Complemental strand, 2059112 - 2059002
Alignment:
Q  542 gtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaagcatgcag 641  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||  |||| |||  |||  | ||  || ||||||||||||||     
T  2059112 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 2059013  T
Q  642 cagatattctt 652  Q
    |||||||||||    
T  2059012 cagatattctt 2059002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 446 - 652
Target Start/End: Complemental strand, 2056004 - 2055798
Alignment:
Q  446 ccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggag-agtagactgcatagtctccaattgtggtt 544  Q
    |||||||||| |||||||||||||||||||  |||  ||||||||| | ||| || ||||||| |   || ||||| || |||| ||  |||  || |||    
T  2056004 ccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgct-cgaaagtagtaggctacataatcagcaacagtagtt 2055906  T
Q  545 tctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaagcatgcagcag 644  Q
    ||| ||||||| |||||||||||||| ||||| |||||||| || |||||||||||| ||||||||  |||| | ||  |  |||||||||||||| |||    
T  2055905 tctttgtatttaggaggattgtcttctgataacagttccttcattggtccatagagctttgaggatgctttaagtcccgtcgagaaaaagcatgcaacag 2055806  T
Q  645 atattctt 652  Q
    ||||||||    
T  2055805 atattctt 2055798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 594
Target Start/End: Original strand, 28782875 - 28782926
Alignment:
Q  543 tttctctgtatttgggaggattgtcttcagataatagttcctttataggtcc 594  Q
    ||||| |||||||||||||||||||||| ||||| | ||| |||||||||||    
T  28782875 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 28782926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 597
Target Start/End: Original strand, 28734918 - 28734976
Alignment:
Q  539 gtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccata 597  Q
    ||||||||||| ||| ||||||| |||||||| ||||||| |||  |||||||||||||    
T  28734918 gtggtttctctatatctgggagggttgtcttctgataataattctgttataggtccata 28734976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 601
Target Start/End: Original strand, 28742051 - 28742113
Alignment:
Q  539 gtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagc 601  Q
    ||||||||||| ||| | ||||| |||||||| ||||| | ||| ||||||||||||||||||    
T  28742051 gtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagc 28742113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 585
Target Start/End: Original strand, 16441760 - 16441803
Alignment:
Q  542 gtttctctgtatttgggaggattgtcttcagataatagttcctt 585  Q
    |||||||| ||||| | |||||||||||||||||||||||||||    
T  16441760 gtttctctatattttgcaggattgtcttcagataatagttcctt 16441803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University