View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19273_high_14 (Length: 248)
Name: NF19273_high_14
Description: NF19273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19273_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 85 - 246
Target Start/End: Complemental strand, 54023920 - 54023760
Alignment:
| Q |
85 |
attagctttatttaaattttataattgagagcttagttttaagtttcatattatataatccaattatgggaaaaatgttnnnnnnnnttctctttaaatt |
184 |
Q |
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| T |
54023920 |
attagctttatttgaattttataattgagagcttagttttaagtttcatattatataatccgattatgggaaaaatgtt-aaaaaaattctctttaaatt |
54023822 |
T |
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| Q |
185 |
ttaacatgaatacccaagcccgaaataactaaagtgtatgattattgttcttctcccctttg |
246 |
Q |
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| T |
54023821 |
ttaacatgaatatccaagcccgaaataactaaagtgtatgattattgctcttctcccttttg |
54023760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 54027268 - 54027056
Alignment:
| Q |
33 |
attttaggggaaaatggagaaatgagaaaaggagtctaagggtgacttatatattagctttatttaaattttataattgagagcttagttttaagtttca |
132 |
Q |
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| T |
54027268 |
atttttggggaaaatggagaaatgagaaaaggagtctaatggtgacttatatattggcattatttgaattttataattcagagcatagttttaagtttca |
54027169 |
T |
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| Q |
133 |
tattatataatccaattatgggaaaaatgttnnnnnnnnttctctttaaattttaacatgaatacccaagcccgaaataactaaagtgtatgattattgt |
232 |
Q |
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| T |
54027168 |
tattatataatccgattatgagaaaattgat-aaaaaaattctctttaaactttaacatgaatacccaaactcgaaataattgaagtgtatgaatattgc |
54027070 |
T |
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| Q |
233 |
tcttctcccctttg |
246 |
Q |
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| T |
54027069 |
ttttctcccttttg |
54027056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 54024054 - 54023980
Alignment:
| Q |
1 |
tggaaataagttgctgaagatattttgagagtattttaggggaaaatggagaaatgagaaaaggagtctaagggt |
75 |
Q |
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| T |
54024054 |
tggaaataagttgctgaagatattttgagagtattttaggggaaaatggagaaatgagaaaaggagtctaagggt |
54023980 |
T |
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