View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19273_high_17 (Length: 207)
Name: NF19273_high_17
Description: NF19273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19273_high_17 |
 | |
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| [»] chr4 (10 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0054 (2 HSPs) |
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| [»] scaffold0613 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 9569097 - 9568913
Alignment:
| Q |
23 |
acgggtgttatgaagaatttctcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttcttcttcttcacacaaccaatgacacacac |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9569097 |
acgggtgttatgaagaatttctcattgctcaagtaaaatgataccaaacatggtccatcctgactatcttcttcttcttcacacaaccaatgacacacac |
9568998 |
T |
|
| Q |
123 |
cattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgagttagttct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9568997 |
cattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgagttagttct |
9568913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 9574231 - 9574044
Alignment:
| Q |
20 |
ggtacgggtgttatgaagaatttctcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttcttcttcttcacacaaccaatgacaca |
119 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| || || ||| ||||||||||| ||||||||||| | |||||||||| |
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|
| T |
9574231 |
ggtatgggtgttatgaagaattcctcattgctcaagtaaaatgataccaaacatgctcgatcttgactatcttcaccttcttcacactatcaatgacaca |
9574132 |
T |
|
| Q |
120 |
caccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgagttagttct |
207 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9574131 |
caccatccatgcaaacttgagtgccgtcaatacctgccaacgaataaggcatgtcaaaaacatcaagtatcctccacgagttagttct |
9574044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 9582160 - 9582339
Alignment:
| Q |
28 |
tgttatgaagaatttctcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttcttcttcttcacacaaccaatgacacacaccattc |
127 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || |||||| ||| | |||| || |||||||| |||||||||||||||||||| | |
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|
| T |
9582160 |
tgttatgaagaattcctcattgctcaagtaaaatgataccacacatggtccctccagggtatcatcaacttcttcagccaaccaatgacacacaccatcc |
9582259 |
T |
|
| Q |
128 |
atgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgagttagttct |
207 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| |||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
9582260 |
atgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgctagaaacatcaagtatcctccacgagttagttct |
9582339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 9587855 - 9588034
Alignment:
| Q |
28 |
tgttatgaagaatttctcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttcttcttcttcacacaaccaatgacacacaccattc |
127 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || |||||| ||| | |||| || |||||||| |||||||||||||||||||| | |
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|
| T |
9587855 |
tgttatgaagaattcctcattgctcaagtaaaatgataccacacatggtccctccagggtatcatcaacttcttcagccaaccaatgacacacaccatcc |
9587954 |
T |
|
| Q |
128 |
atgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgagttagttct |
207 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| |||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
9587955 |
atgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgctagaaacatcaagtatcctccacgagttagttct |
9588034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 9602748 - 9602907
Alignment:
| Q |
20 |
ggtacgggtgttatgaagaatttctcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttcttcttcttcacacaaccaatgacaca |
119 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||| | | |||||| ||||||||||| |||||||| |||||||||||||||| |
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|
| T |
9602748 |
ggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaccatcttccatcttgactatcttcatcttcttcccacaaccaatgacaca |
9602847 |
T |
|
| Q |
120 |
caccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaa |
179 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
9602848 |
caccatccatgtagacttgactgccgtcaataagtgccaaggaataaggcatgtcaaaaa |
9602907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 9593950 - 9594132
Alignment:
| Q |
25 |
gggtgttatgaagaatttctcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttcttcttcttcacacaaccaatgacacacacca |
124 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||| |||| || |||||||| ||||||||||||||||||| |
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|
| T |
9593950 |
gggtgttatgaagaacacctcattgctcaagtaaaaggataccaaacatggtccctccaaggtatcatcaacttcttcagccaaccaatgacacacacca |
9594049 |
T |
|
| Q |
125 |
ttcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgagttagttct |
207 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
9594050 |
tccatgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgccaaaaacattaagtatcctccacgagttagttct |
9594132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 54295255 - 54295440
Alignment:
| Q |
25 |
gggtgttatgaagaatttctcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttcttcttcttcacacaaccaatgacacacacca |
124 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||| |||||||| | || ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
54295255 |
gggtgttatgaaaaacatctcattgctcaagtaaaatgataccaaacatggtccatgcagattatcttcatgcacttcacacaaccaatgacacacacca |
54295354 |
T |
|
| Q |
125 |
ttcatgtagacttgagtgccgtcaataca------tgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgagttagttct |
207 |
Q |
| |
|
| ||||||||||| | ||| ||| || | || |||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
54295355 |
tccatgtagactttggagccctcactatatgggattgacaaagaataaggcatgtc---aacatcaagtatcctccatgagttagttct |
54295440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 37895793 - 37895687
Alignment:
| Q |
98 |
tcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacg |
197 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||| ||||| || ||||| ||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
37895793 |
tcttcacacaaccaatgacacacttcatccatatagacttgggtgccctccttacattccaaagaataaggcatgtc---aacatcaagtttcctccacg |
37895697 |
T |
|
| Q |
198 |
agttagttct |
207 |
Q |
| |
|
| ||| |||| |
|
|
| T |
37895696 |
aattacttct |
37895687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 37897796 - 37897699
Alignment:
| Q |
44 |
tcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttct---tcttcttcacacaaccaatgacacacaccattcatgtagacttg |
138 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||||||| | ||||||||| ||||||| |||||||||||||||||| |||| || ||||||||| |
|
|
| T |
37897796 |
tcattgctcaagtaaaatgacaccagacatggtccatcagggctatcttcttcatcttctttacacaaccaatgacacactccatccaagtagacttg |
37897699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 37895889 - 37895830
Alignment:
| Q |
20 |
ggtacgggtgttatgaagaatttctcattgctcaagtaaaatgataccaaacgtggtcca |
79 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
37895889 |
ggtatgggtgttacgaagaacacctcattgctcaggtaaaatgataccaaacatggtcca |
37895830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 42446150 - 42446044
Alignment:
| Q |
98 |
tcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacg |
197 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||| ||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
42446150 |
tcttcacacaaccaatgacacactccatccatgtagacttgggtgccctcaatacattccaaagaataaggcatgtc---aacatcaagtttcctccacg |
42446054 |
T |
|
| Q |
198 |
agttagttct |
207 |
Q |
| |
|
|||| |||| |
|
|
| T |
42446053 |
ggttacttct |
42446044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 29012671 - 29012590
Alignment:
| Q |
95 |
tcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaa |
176 |
Q |
| |
|
||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||||||| |
|
|
| T |
29012671 |
tcttcttcagacaaccaatgacacactccatccatgtagacttgggtgccgtcaatacagtccaaagaatacggcatgtcaa |
29012590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 29131192 - 29131060
Alignment:
| Q |
44 |
tcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttcttcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgc |
143 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || | ||||| | || |||||||||||||||||||||||||| ||| |||||||| || | |
|
|
| T |
29131192 |
tcattgctcaagtaaaatgataccaaacatggtccaatgggattttcttcatgtttttcacacaaccaatgacacacaccatccatatagacttgggttc |
29131093 |
T |
|
| Q |
144 |
cgtcaatacatgccaaagaataaggcatgtcaa |
176 |
Q |
| |
|
| || |||| | || |||||||||||||||| |
|
|
| T |
29131092 |
ctgcattacagtctaacgaataaggcatgtcaa |
29131060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 34281802 - 34281670
Alignment:
| Q |
44 |
tcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttcttcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgc |
143 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || |||||| | || |||||||||||||||||||||||| | |||||||| ||| |||| |
|
|
| T |
34281802 |
tcattgctcaagtaaaatgataccaaacatggtccaatgggattatctttatgtttttcacacaaccaatgacacacaccgtccatgtagatttgggtgc |
34281703 |
T |
|
| Q |
144 |
cgtcaatacatgccaaagaataaggcatgtcaa |
176 |
Q |
| |
|
| ||| |||| ||| |||| | |||||||||| |
|
|
| T |
34281702 |
cttcagtacagtccacagaagacggcatgtcaa |
34281670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 29299963 - 29299827
Alignment:
| Q |
43 |
ctcattgctcaagtaaaatgataccaaacgtggtccatcctgactatcttcttcttctt---cacacaaccaatgacacacaccattcatgtagacttga |
139 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| | | |||| || ||| |||| ||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
29299963 |
ctcattgctcaagtaaaatgacaccaaacatggtccagcggggctatgtttttcatctttttcacacaaccaatggcacactccatccatgtagacttgg |
29299864 |
T |
|
| Q |
140 |
gtgccgtcaatacatgccaaagaataaggcatgtcaa |
176 |
Q |
| |
|
||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
29299863 |
gtgccctcagtacgatcagaagaataaggcatgtcaa |
29299827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 29152323 - 29152358
Alignment:
| Q |
44 |
tcattgctcaagtaaaatgataccaaacgtggtcca |
79 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29152323 |
tcattgctcaagtaaaatgataccaaacatggtcca |
29152358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 25529001 - 25529047
Alignment:
| Q |
43 |
ctcattgctcaagtaaaatgataccaaacgtggtccatcctgactat |
89 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| | ||||||| |
|
|
| T |
25529001 |
ctcattgctcaagttaaatgataccaaacatggtccaccatgactat |
25529047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 23218788 - 23218824
Alignment:
| Q |
43 |
ctcattgctcaagtaaaatgataccaaacgtggtcca |
79 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
23218788 |
ctcattgctcaagtaaaatgacaccaaacatggtcca |
23218824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 33709 - 33749
Alignment:
| Q |
98 |
tcttcacacaaccaatgacacacaccattcatgtagacttg |
138 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
33709 |
tcttcacacaaccaatgacacactccatccatgtagacttg |
33749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 40060 - 40100
Alignment:
| Q |
98 |
tcttcacacaaccaatgacacacaccattcatgtagacttg |
138 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
40060 |
tcttcacacaaccaatgacacactccatccatgtagacttg |
40100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0613 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0613
Description:
Target: scaffold0613; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 105 - 49
Alignment:
| Q |
20 |
ggtacgggtgttatgaagaatttctcattgctcaagtaaaatgataccaaacgtggt |
76 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||||||| ||||||| |||| |
|
|
| T |
105 |
ggtatgggtgttattaagaacacctcattgctcaagtaaaatgacaccaaacatggt |
49 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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