View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19273_high_2 (Length: 512)
Name: NF19273_high_2
Description: NF19273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19273_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 44734915 - 44735419
Alignment:
| Q |
1 |
tgatggacaagaagtgatccccaaagacaaatatgtgttgggtttcaatgaccaccaaacaattacagatatttcacagaggcattaatttattgataca |
100 |
Q |
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|||||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||| || |
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| T |
44734915 |
tgatggacaatacatgatccccaaagccaaatatgtgttgggtttcaatggtcaccaaacaattccagatatttctcagaggcattaatttgttgatcca |
44735014 |
T |
|
| Q |
101 |
tatatggtaccattttaatgaaataataataactcctaatgtgctcatgattttctccattaaaattcattccattcatcatcaatgctaacaaaatata |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44735015 |
tatatggtactattttaatgaaataataataactcctaatgtgctcatgattttctccattaaaattcattccattcatcatcaatgccaacaaaatata |
44735114 |
T |
|
| Q |
201 |
tgcactgnnnnnnnnnnnn--ggtacatatgaattattagtgatatgtgcagaatgattaccttgtaccatttgacctcttgagtgattatcgcctaatg |
298 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44735115 |
tgcactgttttttttttttttggtacatatgaattattagtgatatgtgcagaatgattaccttgtaccatttgacctcttgagtgattatcgccgaatg |
44735214 |
T |
|
| Q |
299 |
ttgagaaagggaatatgggctctcctaagatatagtagtttccaaaaccaacaaggcagtaactatagcaataattcttgatttgttgggaatcaaattg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44735215 |
ttgagaaagggaatatgggctctcctaagatatagtagtttccaaaaccaacaaggcagtaactatagcaataattcttgatttgttgggaattaaattg |
44735314 |
T |
|
| Q |
399 |
acatcaaataaggagtagatgtgcc------ttctaagtctaacccttcagcccctatacttccttgcgttctacctcttataatgatgcaatattgcca |
492 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44735315 |
acatcaaataaggagtagatgtgccttctagttctaagtctaacccttcagcccctatacttccttgcattctacctcttataatgatgcaatattgcca |
44735414 |
T |
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| Q |
493 |
caaat |
497 |
Q |
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| T |
44735415 |
caaat |
44735419 |
T |
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