View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19273_high_5 (Length: 452)

Name: NF19273_high_5
Description: NF19273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19273_high_5
NF19273_high_5
[»] chr6 (1 HSPs)
chr6 (1-436)||(13328150-13328582)
[»] chr4 (4 HSPs)
chr4 (197-361)||(37919792-37919953)
chr4 (197-331)||(33831827-33831958)
chr4 (384-430)||(37074181-37074227)
chr4 (379-444)||(46596598-46596663)
[»] chr8 (1 HSPs)
chr8 (191-331)||(36997904-36998041)
[»] chr1 (2 HSPs)
chr1 (212-279)||(19824981-19825048)
chr1 (385-444)||(35023526-35023585)
[»] chr7 (1 HSPs)
chr7 (379-430)||(45187249-45187300)
[»] chr2 (1 HSPs)
chr2 (385-436)||(32666041-32666092)
[»] chr3 (1 HSPs)
chr3 (384-430)||(36497942-36497988)


Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 13328582 - 13328150
Alignment:
Q  1 ctgcgttcgttcttgtgttggctcactgtttctgcaacttttgactacgtttgataagttctttggaggttcccttgttgttggtttccttttccagtaa 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13328582 ctgcgttcgttcttgtgttggctcgctgtttctgcaacttttgactacgtttgataagtgctttggaggttcccttgttgttggtttccttttccagtaa 13328483  T
Q  101 atcactgttgtattttgcatctacagtggatatccgcccattttatcattgttgtttgaaatgtttgcagttagtttattccgatatttgtgtttttatt 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  13328482 atcacttttgtattttgcatctacagtggatatccgcccattttatcattgttgtttgaaaggtttgcagttagtttgttccgatatttgtgtttttatt 13328383  T
Q  201 tgatggttgtccaagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagttttccagtctcactctatcgggtcatggattttagattc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||||||||||||||    
T  13328382 tgatggttgtccaagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagtttgcccatctcactctatggggtcatggattttagattc 13328283  T
Q  301 aggcacttcttctgatcatgtagttggtaatttgtcctttgtttataacttgacgcctcctnnnnnnnnnnnnnnnnnttaccgttgctaatgattctaa 400  Q
    ||||    |||||||||||||||||||||||  |||| |||||||||||||||| ||||||                 ||||| ||||||||||||||||    
T  13328282 aggc---gcttctgatcatgtagttggtaatccgtcccttgtttataacttgacacctcctaaaactacctcacaaaattacccttgctaatgattctaa 13328186  T
Q  401 ggcgcaggttactggtattggtaaagcttcaccttt 436  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13328185 ggcgcaggttattggtattggtaaagcttcaccttt 13328150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 361
Target Start/End: Complemental strand, 37919953 - 37919792
Alignment:
Q  197 tatttgatggttgtccaagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagttttccagtctcactctatcgggtcatggattttag 296  Q
    ||||||||||||  |||| ||||||||||||| || ||| || ||||| | |||||||| || |||| |   ||||||||||| || |||||||||||||    
T  37919953 tatttgatggtttcccaaaaggtttcaacttcggttacattgtctcatttcagtaattctacggtttgcttatctcactctatgggatcatggattttag 37919854  T
Q  297 attcaggcacttcttctgatcatgtagttggtaatttgtcctttgtttataacttgacgcctcct 361  Q
    |||| ||   | ||||||||||||||||||||||| ||||  || ||||||| ||| | ||||||    
T  37919853 attcggg---tgcttctgatcatgtagttggtaatatgtctcttatttataatttgtcacctcct 37919792  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 331
Target Start/End: Original strand, 33831827 - 33831958
Alignment:
Q  197 tatttgatggttgtccaagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagttttccagtctcactctatcgggtcatggattttag 296  Q
    |||||||||| |  |||| ||||||||||||| || ||| |||||||| | |||||||| || |||| |   ||||||||||| || |||||||||||||    
T  33831827 tatttgatggcttaccaaaaggtttcaacttcggttacattggctcatttcagtaattctacggtttgcttatctcactctatgggatcatggattttag 33831926  T
Q  297 attcaggcacttcttctgatcatgtagttggtaat 331  Q
    |||| ||   | |||||||| ||||||||||||||    
T  33831927 attcggg---tgcttctgattatgtagttggtaat 33831958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 37074181 - 37074227
Alignment:
Q  384 gttgctaatgattctaaggcgcaggttactggtattggtaaagcttc 430  Q
    |||||||||||||||||||| || ||||||||||||||| |||||||    
T  37074181 gttgctaatgattctaaggcacaagttactggtattggtcaagcttc 37074227  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 46596663 - 46596598
Alignment:
Q  379 ttaccgttgctaatgattctaaggcgcaggttactggtattggtaaagcttcacctttttcatctc 444  Q
    ||||| ||||||||| ||||||||| || ||||||||||||||| | || |||||| | |||||||    
T  46596663 ttacccttgctaatggttctaaggcacaagttactggtattggtcaggcatcacctctatcatctc 46596598  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 191 - 331
Target Start/End: Original strand, 36997904 - 36998041
Alignment:
Q  191 tgtttttatttgatggttgtccaagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagttttccagtctcactctatcgggtcatgga 290  Q
    ||||| |||||||||| || |||| ||||||||||||| || ||| |||||||| | |||||||| ||| | | |   ||||| ||||| || ||| |||    
T  36997904 tgtttgtatttgatggctgcccaaaaggtttcaacttcggttacattggctcatttcagtaattctacaatctgcttatctcattctatgggatcacgga 36998003  T
Q  291 ttttagattcaggcacttcttctgatcatgtagttggtaat 331  Q
    |||||||||| ||   | |||||||||||||||||||||||    
T  36998004 ttttagattcggg---tgcttctgatcatgtagttggtaat 36998041  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 19825048 - 19824981
Alignment:
Q  212 caagaggtttcaacttcagtcacaatggctcatgtaagtaattcaacagttttccagtctcactctat 279  Q
    |||||||||||||| ||||||||| |||||||| | |||||||| ||||||| ||  |||||||||||    
T  19825048 caagaggtttcaacgtcagtcacattggctcatttcagtaattctacagtttgcctatctcactctat 19824981  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 35023526 - 35023585
Alignment:
Q  385 ttgctaatgattctaaggcgcaggttactggtattggtaaagcttcacctttttcatctc 444  Q
    ||||||||| ||| ||||| || ||||||||||||||| ||| ||||||||| |||||||    
T  35023526 ttgctaatggttccaaggcacaagttactggtattggtcaagtttcacctttgtcatctc 35023585  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Complemental strand, 45187300 - 45187249
Alignment:
Q  379 ttaccgttgctaatgattctaaggcgcaggttactggtattggtaaagcttc 430  Q
    |||| |||||||||| ||||||||| || ||||||||||||||| |||||||    
T  45187300 ttactgttgctaatggttctaaggcacaagttactggtattggtcaagcttc 45187249  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Complemental strand, 32666092 - 32666041
Alignment:
Q  385 ttgctaatgattctaaggcgcaggttactggtattggtaaagcttcaccttt 436  Q
    ||||||||| ||||||| | || ||||||||||||||| |||||||||||||    
T  32666092 ttgctaatgcttctaagtcacaagttactggtattggtcaagcttcaccttt 32666041  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 36497942 - 36497988
Alignment:
Q  384 gttgctaatgattctaaggcgcaggttactggtattggtaaagcttc 430  Q
    |||||||||| ||||||||| || ||||||||||||||| |||||||    
T  36497942 gttgctaatggttctaaggcacaagttactggtattggtcaagcttc 36497988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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