View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19273_low_10 (Length: 276)
Name: NF19273_low_10
Description: NF19273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19273_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 261
Target Start/End: Original strand, 54024031 - 54024288
Alignment:
| Q |
4 |
aatatcttcagcaacttatttccattgtctttggataaagaaagaaaagttggagaagttggaatggtgaagagtgatgttagtagatggtcattaaatt |
103 |
Q |
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| T |
54024031 |
aatatcttcagcaacttatttccattgtctttggataaagaaagaaaagttggagaagttggaatggtgaatattgatgttagtagatggtcattaaatt |
54024130 |
T |
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| Q |
104 |
ggttgaggaatctaacttaggaaggaagaaaagaatcaattaatgagccagctagagtcttagaataagtggtgttaaaagaacttgatgaaaatagata |
203 |
Q |
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| T |
54024131 |
ggttgaggaatctaacttaggaaggaagaaaagaatcaattaatgagccagctagagtcttagaataagtggtgttaaaagaacttgatgaaaatagata |
54024230 |
T |
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| Q |
204 |
ggtgtggatactggattgatagatcttcgaattttaacagagtaatttccaagataac |
261 |
Q |
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| T |
54024231 |
ggtgtggatactggattgatagatcttcgaattttaacagagtaatttccaagataac |
54024288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 54020537 - 54020652
Alignment:
| Q |
17 |
acttatttccattgtctttggataaagaaagaaaagttggagaagttggaatggtgaagagtgatgttagtagatggtcattaaattggttgaggaatct |
116 |
Q |
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| T |
54020537 |
acttatttagattgtctttggataaagaaagaaaagttggagaagttggaatggtgaagagtgatgttagcagatggtcattaaattggttgaggaatct |
54020636 |
T |
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| Q |
117 |
aacttaggaaggaaga |
132 |
Q |
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| T |
54020637 |
aacttaggaagaaaga |
54020652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 54020718 - 54020765
Alignment:
| Q |
154 |
gctagagtcttagaataagtggtgttaaaagaacttgatgaaaataga |
201 |
Q |
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| T |
54020718 |
gctagagtcttagaataagtggagttcaaataacttgaggaaaataga |
54020765 |
T |
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