View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19273_low_13 (Length: 252)
Name: NF19273_low_13
Description: NF19273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19273_low_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 9525667 - 9525871
Alignment:
| Q |
6 |
atgtccaagaatatggataccatgaaaattgatagggcgtatgatatgctcattaagaagggtattggttccccctgagacctctcttattctgttcaag |
105 |
Q |
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| T |
9525667 |
atgttcaagaatatggataccatgaaaattgacagggtgtatgatatgctcattaagaagggtattggttccccctgagacctctcttattctgttcaag |
9525766 |
T |
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| Q |
106 |
gaccccttaataataatcagaataaaattaagttatatatcaaactataaacatttctagaaatttttgaagttgagtatcaagcttttgtaataagttt |
205 |
Q |
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| T |
9525767 |
gaccccttaataataatcagattaaaattaagttatatatcaaactataaacatttctagatatttttgaagttgagtatcaagcttttgtaataagttt |
9525866 |
T |
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| Q |
206 |
ctatc |
210 |
Q |
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||||| |
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| T |
9525867 |
ctatc |
9525871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 9498674 - 9498759
Alignment:
| Q |
6 |
atgtccaagaatatggataccatgaaaattgatagggcgtatgatatgctcattaagaagggtattggttccccctgagacctctc |
91 |
Q |
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| T |
9498674 |
atgttcaagaatatggataccatcaaaattgacagggtgtatgatatgctcattaagaagggaattggctcaccctgagacctctc |
9498759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 36872391 - 36872136
Alignment:
| Q |
6 |
atgtccaagaatatggataccatgaaaattgatagggcgtatgatatgctcattaagaagggtattggttccccctgagacctctcttattct------- |
98 |
Q |
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| T |
36872391 |
atgttcaagaatatggataccatgaaaattgacagggtgtatgatatgctcattaagaagggcattggttccccctgagacctctcttaatctattattt |
36872292 |
T |
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| Q |
99 |
-gttcaaggaccccttaataataatcagaataaaattaagttatatatcaaactataaacatttctagaaatttttgaagttgagtatcaagcttttgta |
197 |
Q |
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| T |
36872291 |
agttcaaggaccccttaataataatcagaataaaattaagttatatatcaaactataaacatttctagaaatttttgaagtgttgtatcaagcttttgta |
36872192 |
T |
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| Q |
198 |
ataagtttctatccgaca-ttttcatgcactgtggagtggatagaagtggtgtgta |
252 |
Q |
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| T |
36872191 |
ataagtttctatccgacatttttcatgcactatggagtggagagaagtggtgtgta |
36872136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 36873906 - 36874149
Alignment:
| Q |
18 |
atggataccatgaaaattgatagggcgtatgatatgctcattaagaagggtattggttccccctgagacctctcttattctgtt--------caaggacc |
109 |
Q |
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| T |
36873906 |
atggataccatgaaaattgacagggtgcatgatatgctcattatgaagggtattcgttccccctgagacctctcttaatctattattttgatcaaggacc |
36874005 |
T |
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| Q |
110 |
ccttaataataatcagaataaaattaagttatatatcaaactataaacatttctagaaatttttgaagttgagtatcaagcttttgtaataagtttctat |
209 |
Q |
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| T |
36874006 |
ccttaataataatcagaataaaattaagttatatatcaaactataaacatttccagaaatttttgaagtgttgtatcaagcttttgtaataagtttctat |
36874105 |
T |
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| Q |
210 |
ccgaca-ttttcatgcactgtggagtggatagaagtggtgtgta |
252 |
Q |
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| T |
36874106 |
ctgacatttttcatgcactgtggagtggacagaagtggtgtgta |
36874149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 23043591 - 23043524
Alignment:
| Q |
18 |
atggataccatgaaaattgatagggcgtatgatatgctcattaagaagggtattggttccccctgaga |
85 |
Q |
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| T |
23043591 |
atggataccatgaaagttgacatggtttatgatatgctcattaagaagggatttggttcaccctgaga |
23043524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 23043523 - 23043458
Alignment:
| Q |
107 |
accccttaataataatcagaataaaattaagttatatatcaaactataaacatttctagaaatttt |
172 |
Q |
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| T |
23043523 |
accccataattataatcaaaataaaatctagttatagttcaaactataaacaattctagaaatttt |
23043458 |
T |
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