View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19273_low_3 (Length: 487)
Name: NF19273_low_3
Description: NF19273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19273_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 469
Target Start/End: Original strand, 31912005 - 31912453
Alignment:
| Q |
15 |
tatcacaacgtaaaaaacatcctttcaataatagaaattaaagagcacaaattgaagaagttgataaccaataaaatctaaaccaacatgctaagagttt |
114 |
Q |
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| T |
31912005 |
tatcacaacgtaaaaaacatcctttcaataatagaaattaaagagcacaaattgaagaagttgataaccaataaaatctaaaccaacatgctaagagttt |
31912104 |
T |
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| Q |
115 |
attaattacactcactctcattatctcccacagtgatttcaaatcttattgaacaacatcattttctttgacataacaatatgcatccattaacgagatg |
214 |
Q |
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| T |
31912105 |
attaattacactcactct-attatctcccacagtgatttcaaatcttattgaacaacatcattttctttgacataacaatatgcatccattaacgagatg |
31912203 |
T |
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| Q |
215 |
gaattaatgacttcacgaacaaaaacaagatatatattaagggtcattaagccaaagcttagcaagatgaataggtgaagtgcaaagcctatgaatctct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31912204 |
gaattaatgacttcacgaacaaaaacaagatatatattaagggtcattaagccaaagcttagcaagatgaataggtgaagtacaaagcctatgaatctct |
31912303 |
T |
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| Q |
315 |
tcaactttccaaagagtggcttcaacgtaacacttccacatcttgattgatcccattattgcttacaaagcatgtatgtaagataatgcaatggttggcc |
414 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31912304 |
tcaactttccaaagagtggcttc-----aacacttccacatcttgattgatcccattattgcttacaaagcatgtatgtaagataatgcaatggttggcc |
31912398 |
T |
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| Q |
415 |
atacaatagtggaannnnnnncatgaaattttggtattttgttgcaagctccact |
469 |
Q |
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| T |
31912399 |
atacaatagtggaatttttttcatgaaattttggtattttgttgcaagctccact |
31912453 |
T |
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