View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19273_low_4 (Length: 482)

Name: NF19273_low_4
Description: NF19273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19273_low_4
NF19273_low_4
[»] chr5 (22 HSPs)
chr5 (22-467)||(37207405-37207850)
chr5 (22-212)||(23164446-23164636)
chr5 (22-212)||(22600700-22600890)
chr5 (22-212)||(11850113-11850303)
chr5 (22-212)||(11852371-11852561)
chr5 (255-445)||(37221400-37221590)
chr5 (22-171)||(1779423-1779580)
chr5 (26-212)||(1779661-1779855)
chr5 (255-344)||(37386889-37386978)
chr5 (239-333)||(37226985-37227079)
chr5 (253-333)||(37196036-37196116)
chr5 (239-333)||(37201011-37201105)
chr5 (255-353)||(37440536-37440634)
chr5 (22-67)||(37215396-37215441)
chr5 (135-237)||(1779748-1779850)
chr5 (165-231)||(23164529-23164595)
chr5 (165-231)||(11850196-11850262)
chr5 (165-234)||(1779514-1779583)
chr5 (165-222)||(11852454-11852511)
chr5 (134-235)||(23164528-23164629)
chr5 (397-461)||(37387013-37387077)
chr5 (134-237)||(22600705-22600808)
[»] chr8 (15 HSPs)
chr8 (22-212)||(36379673-36379863)
chr8 (22-212)||(36377388-36377578)
chr8 (22-237)||(21268336-21268550)
chr8 (22-171)||(4876821-4876970)
chr8 (22-171)||(4879149-4879298)
chr8 (30-171)||(24519368-24519509)
chr8 (165-242)||(4876810-4876887)
chr8 (165-237)||(4879143-4879215)
chr8 (165-237)||(24519443-24519515)
chr8 (104-208)||(21268447-21268551)
chr8 (165-231)||(36377471-36377537)
chr8 (165-231)||(36379756-36379822)
chr8 (134-235)||(36377470-36377571)
chr8 (134-235)||(36379755-36379856)
chr8 (178-212)||(4879138-4879172)
[»] chr1 (13 HSPs)
chr1 (22-212)||(29833281-29833471)
chr1 (22-212)||(734784-734974)
chr1 (22-212)||(2404033-2404223)
chr1 (78-208)||(2416660-2416791)
chr1 (22-171)||(8933755-8933912)
chr1 (90-161)||(419213-419284)
chr1 (134-237)||(29833363-29833466)
chr1 (165-232)||(2404116-2404183)
chr1 (166-231)||(734868-734933)
chr1 (22-77)||(18353733-18353788)
chr1 (188-233)||(419221-419266)
chr1 (144-237)||(734876-734969)
chr1 (165-237)||(8933846-8933918)
[»] chr2 (12 HSPs)
chr2 (22-212)||(31486671-31486861)
chr2 (22-212)||(31488955-31489145)
chr2 (18-171)||(34576802-34576968)
chr2 (22-210)||(23859767-23859972)
chr2 (101-212)||(15729871-15729981)
chr2 (134-231)||(29801773-29801871)
chr2 (40-201)||(29801773-29801940)
chr2 (136-212)||(34576903-34576979)
chr2 (134-235)||(31486678-31486779)
chr2 (174-237)||(34576911-34576974)
chr2 (180-237)||(15729876-15729933)
chr2 (134-235)||(31488962-31489063)
[»] chr7 (25 HSPs)
chr7 (22-212)||(36464429-36464619)
chr7 (22-212)||(3934742-3934932)
chr7 (47-212)||(8414721-8414886)
chr7 (22-208)||(3932507-3932693)
chr7 (26-207)||(3051993-3052178)
chr7 (22-171)||(8733703-8733849)
chr7 (22-142)||(19788927-19789047)
chr7 (22-142)||(19786621-19786741)
chr7 (86-233)||(16497078-16497225)
chr7 (22-171)||(42678776-42678933)
chr7 (134-237)||(3932508-3932611)
chr7 (134-237)||(3934747-3934850)
chr7 (128-233)||(16535272-16535377)
chr7 (128-233)||(16630285-16630390)
chr7 (86-209)||(16535260-16535383)
chr7 (86-209)||(16630279-16630402)
chr7 (165-237)||(8733783-8733855)
chr7 (165-237)||(42678867-42678939)
chr7 (134-237)||(8414778-8414881)
chr7 (134-208)||(8733782-8733856)
chr7 (134-212)||(42678866-42678944)
chr7 (117-212)||(16497139-16497234)
chr7 (134-237)||(36464511-36464614)
chr7 (144-237)||(3051993-3052086)
chr7 (165-202)||(19788927-19788964)
[»] chr4 (14 HSPs)
chr4 (22-212)||(45166859-45167049)
chr4 (22-208)||(45161971-45162157)
chr4 (22-171)||(42468645-42468794)
chr4 (22-171)||(42470974-42471123)
chr4 (22-143)||(50855967-50856088)
chr4 (165-237)||(42468728-42468800)
chr4 (165-237)||(42471057-42471129)
chr4 (134-237)||(45161972-45162075)
chr4 (134-237)||(45166864-45166967)
chr4 (25-143)||(8739249-8739368)
chr4 (18-73)||(19429279-19429334)
chr4 (165-212)||(50856050-50856097)
chr4 (178-212)||(42468771-42468805)
chr4 (208-237)||(50856063-50856092)
[»] chr3 (5 HSPs)
chr3 (90-208)||(18966398-18966518)
chr3 (128-208)||(39578235-39578315)
chr3 (134-237)||(18966412-18966517)
chr3 (40-75)||(1701104-1701139)
chr3 (22-79)||(18966317-18966374)
[»] scaffold0008 (2 HSPs)
scaffold0008 (124-208)||(73069-73153)
scaffold0008 (165-237)||(73070-73142)
[»] chr6 (3 HSPs)
chr6 (22-143)||(21199146-21199275)
chr6 (165-212)||(21199137-21199184)
chr6 (208-237)||(21199142-21199171)
[»] scaffold0050 (4 HSPs)
scaffold0050 (125-212)||(29122-29209)
scaffold0050 (125-212)||(31440-31527)
scaffold0050 (26-79)||(29261-29314)
scaffold0050 (26-79)||(31574-31627)
[»] scaffold0312 (2 HSPs)
scaffold0312 (90-161)||(11287-11358)
scaffold0312 (188-233)||(11305-11350)


Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 22 - 467
Target Start/End: Complemental strand, 37207850 - 37207405
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207850 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 37207751  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttc 221  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207750 tacagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttc 37207651  T
Q  222 catattattcttcatctcaaagtgtccgcatgtctaagtggatatgtgatgaacaaaccataatccttggaaacctctctgttcccacaggaacagttaa 321  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207650 catattattcttcatcacaaagtgtccgcatgtctaagtggatatgtgatgaacaaaccataatccttggaaacctctctgttcccacaggaacagttaa 37207551  T
Q  322 tagtaacattaaccttcgcagaaaaaggaatatcggtcacagaataagagttgactctccccatccactccaaagtggtcaaattactaaaagtgaactc 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207550 tagtaacattaaccttcgcagaaaaaggaatatcggtcacagaataagagttgactctccccatccactccaaagtggtcaaattactaaaagtgaactc 37207451  T
Q  422 agcaacggaagcataggtatctcctggttgtagctcgtactgaaat 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37207450 agcaacggaagcataggtatctcctggttgtagctcgtactgaaat 37207405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 23164446 - 23164636
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23164446 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgtttatttagtagtgtctagtagcttccttattattccctagtattc 23164545  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23164546 tagagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattcttcaccattct 23164636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 22600890 - 22600700
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  22600890 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtcaagtagctttcttattattccatagtattc 22600791  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22600790 tagagacttctatattattatttagtcttctagagacttccacattattccctaatattctagagtcttccatattattcttcatcattct 22600700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 11850113 - 11850303
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  11850113 atactcttgtacataagcctagaaggatctagaaaatttaagacttccctagtgcttatttagtagtgtctagtagctttcttattattccctagtattt 11850212  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||    
T  11850213 tagagacttctatattattctttagtcttctagagacttccacattattccatagtattcaagagtcttccatattattcttcaccattct 11850303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 11852371 - 11852561
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11852371 atactctagtacataagcctagaaggtcctagaaaagttatgacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 11852470  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||| ||||||    
T  11852471 tagagacttctatattattctttagtcttctagagacttcctcattatttcatagtattctagagtcttccatattattcttcaccattct 11852561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 255 - 445
Target Start/End: Complemental strand, 37221590 - 37221400
Alignment:
Q  255 ctaagtggatatgtgatgaacaaaccataatccttggaaacctctctgttcccacaggaacagttaatagtaacattaaccttcgcagaaaaaggaatat 354  Q
    ||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||| ||||| ||    
T  37221590 ctaagagggtatgtgatgaacaaaccataatccttagaaacctctctgctcccacaggaacagttaacagtaacattaaccatcgcagaaacaggaagat 37221491  T
Q  355 cggtcacagaataagagttgactctccccatccactccaaagtggtcaaattactaaaagtgaactcagcaacggaagcataggtatctcc 445  Q
    ||||  ||| ||||  |||||||||| |||||||||||   || ||||||||  || ||||   |||||||| ||||| |||| |||||||    
T  37221490 cggttccaggataactgttgactctctccatccactcctcggtagtcaaatttgtataagtcctctcagcaatggaaggatagatatctcc 37221400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 1779423 - 1779580
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctt------atttagt--agtgtctagtagcttccttattattccc 113  Q
    |||||||||| |||| | |||||||||||||||||  |||||| ||  |||||||||      |||||||  |||||||||||||||||||||||||||     
T  1779423 atactctagttcatatgactagaaggatctagaaacattaagatttttctagtgctttattttatttagtggagtgtctagtagcttccttattattcca 1779522  T
Q  114 tagtattctagagacttctatattattctttagtcttctagaaacttccacattattc 171  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  1779523 tagtattttagagacttctatattattctttagttttctagaaacttccatattattc 1779580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 1779661 - 1779855
Alignment:
Q  26 tctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctt-attt-----agtag--tgtctagtagcttccttattattccctagt 117  Q
    |||||| |||| | |||||||||||||||||  |||||| |||||||| |||| ||||     |||||  ||||||||||||||   |||||||  ||||    
T  1779661 tctagttcatatgactagaaggatctagaaacattaagatttccctagcgctttattttatccagtagaatgtctagtagcttcgacattattctttagt 1779760  T
Q  118 attctagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||||||| ||||||||||||||| || | || ||||||||||| |||  ||||||||||  | |||||||||||||||||||||||||    
T  1779761 attctagagacttccatattattctttagtgttatggagacttccacatttttctttagtattctaaggacttccatattattcttcatcattct 1779855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 255 - 344
Target Start/End: Original strand, 37386889 - 37386978
Alignment:
Q  255 ctaagtggatatgtgatgaacaaaccataatccttggaaacctctctgttcccacaggaacagttaatagtaacattaaccttcgcagaa 344  Q
    ||||| |||||||| |||||||||||||||||||||||||||  | |||  |||||||||||||||| |||||||||||||||| |||||    
T  37386889 ctaagaggatatgttatgaacaaaccataatccttggaaaccattttgtctccacaggaacagttaacagtaacattaaccttcacagaa 37386978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 37227079 - 37226985
Alignment:
Q  239 caaagtgtccgcatgtctaagtggatatgtgatgaacaaaccataatccttggaaacctctctgttcccacaggaacagttaatagtaacattaa 333  Q
    |||||||||  || ||||||| |||||||| ||||||||||||||||| || |||||||||| ||||||||||||||| |||| ||| |||||||    
T  37227079 caaagtgtcgtcaggtctaagaggatatgtaatgaacaaaccataatcttttgaaacctctccgttcccacaggaacaattaacagtgacattaa 37226985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 37196116 - 37196036
Alignment:
Q  253 gtctaagtggatatgtgatgaacaaaccataatccttggaaacctctctgttcccacaggaacagttaatagtaacattaa 333  Q
    ||||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| |||| |||||||||||    
T  37196116 gtctaagaggatatgtaataaacaaaccataatccttggaaacatcactgttcccacatgaacaattaacagtaacattaa 37196036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 37201105 - 37201011
Alignment:
Q  239 caaagtgtccgcatgtctaagtggatatgtgatgaacaaaccataatccttggaaacctctctgttcccacaggaacagttaatagtaacattaa 333  Q
    |||||||||| ||  |||||||||||||||||||||||| ||||||||| | ||||||||| | |||||||| ||||| |||| |||||| ||||    
T  37201105 caaagtgtcctcacttctaagtggatatgtgatgaacaatccataatccatagaaacctctttattcccacaagaacaattaacagtaactttaa 37201011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 353
Target Start/End: Complemental strand, 37440634 - 37440536
Alignment:
Q  255 ctaagtggatatgtgatgaacaaaccataatccttggaaacctctctgttcccacaggaacagttaatagtaacattaaccttcgcagaaaaaggaata 353  Q
    ||||| |||||||| | |||||||||||||||||||||||||  ||| |  |||||||||||||||| ||||||||||||| || |||||  |||||||    
T  37440634 ctaagaggatatgttacgaacaaaccataatccttggaaaccagtctttctccacaggaacagttaacagtaacattaaccatcacagaatcaggaata 37440536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 37215441 - 37215396
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagactt 67  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  37215441 atactctagtatataagcctagaaggatctagaaaagttaagactt 37215396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 1779748 - 1779850
Alignment:
Q  135 attattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttc 234  Q
    ||||||||||||| ||||||| ||||||| |||||||  |||| || | ||| |||||| ||| ||||| |  ||||||  |||||||||||||||||||    
T  1779748 attattctttagtattctagagacttccatattattctttagtgttatggagacttccacatttttctttagtattctaaggacttccatattattcttc 1779847  T
Q  235 atc 237  Q
    |||    
T  1779848 atc 1779850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 23164529 - 23164595
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattc 231  Q
    |||||||||||||||||||||| |||| ||||||||||| |   ||||||||||||||| |||||||    
T  23164529 attattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattc 23164595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 11850196 - 11850262
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattc 231  Q
    |||||||||||||||| ||||| |||| ||||||||||| |   ||||||||||||||| |||||||    
T  11850196 attattccctagtattttagagacttctatattattctttagtcttctagagacttccacattattc 11850262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 1779514 - 1779583
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttc 234  Q
    |||||||| ||||||| ||||| |||| ||||||||||| |   ||||||| ||||||||||||||||||    
T  1779514 attattccatagtattttagagacttctatattattctttagttttctagaaacttccatattattcttc 1779583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 11852454 - 11852511
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttcc 222  Q
    |||||||||||||||||||||| |||| ||||||||||| |   ||||||||||||||    
T  11852454 attattccctagtattctagagacttctatattattctttagtcttctagagacttcc 11852511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 23164528 - 23164629
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||||| ||||| | |||||||  |||| |||||||| |||||| |||||||   |  ||||||||| ||||||||||||||||    
T  23164528 tattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattctt 23164627  T
Q  234 ca 235  Q
    ||    
T  23164628 ca 23164629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 37387013 - 37387077
Alignment:
Q  397 tggtcaaattactaaaagtgaactcagcaacggaagcataggtatctcctggttgtagctcgtac 461  Q
    |||||||||| |||||||| |||||||||| |||||||||||| |||| ||| || | |||||||    
T  37387013 tggtcaaattgctaaaagtcaactcagcaatggaagcataggtctctcttgggtgaaactcgtac 37387077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 22600808 - 22600705
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||||| ||||| | ||||||   |||| |||||||| |||||| |||||||   |  ||||||||| ||||||||||||||||    
T  22600808 tattattccatagtattctagagacttctatattattatttagtcttctagagacttccacattattccctaatattctagagtcttccatattattctt 22600709  T
Q  234 catc 237  Q
    ||||    
T  22600708 catc 22600705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 8e-99; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 36379673 - 36379863
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36379673 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 36379772  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36379773 tagagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattcttcaccattct 36379863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 36377388 - 36377578
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36377388 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 36377487  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  36377488 tagagacttctatattattctttagtcttctagagacttccacattattccttagtattctagagtcttccatattattcttcaccattct 36377578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 21268336 - 21268550
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||| ||||||||||  |||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  21268336 atactttagtacataaaactagaaggatctagaaaagtcaagacttccctagtt-ttatttagtagtgtctagtagcttccttattattccctagtattc 21268434  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttc 221  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21268435 tagagacttctatattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattcttcaccattctagagacttc 21268534  T
Q  222 catattattcttcatc 237  Q
    ||||||||||||||||    
T  21268535 catattattcttcatc 21268550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 4876970 - 4876821
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  4876970 atactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtttctagtagcttccttattattccccagtattc 4876871  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattc 171  Q
    ||||| |||| ||||||||||| |   ||||||| ||||||| |||||||    
T  4876870 tagagtcttccatattattcttcaccattctagagacttccatattattc 4876821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 4879298 - 4879149
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  4879298 atactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtttctagtagcttccttattattccccagtattc 4879199  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattc 171  Q
    ||||| |||| ||||||||||| |   ||||||| ||||||| |||||||    
T  4879198 tagagtcttccatattattcttcaccattctagagacttccatattattc 4879149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 24519368 - 24519509
Alignment:
Q  30 gtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagact 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| ||    
T  24519368 gtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctggtagcttccttattattccccagtattctagagtct 24519467  T
Q  130 tctatattattctttagtcttctagaaacttccacattattc 171  Q
    || ||||||||||| |   ||||||| ||||||| |||||||    
T  24519468 tccatattattcttcaccattctagagacttccatattattc 24519509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 4876887 - 4876810
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatctcaaa 242  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  4876887 attattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattcttcatcacaaa 4876810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 4879215 - 4879143
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4879215 attattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattcttcatc 4879143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 24519443 - 24519515
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24519443 attattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattcttcatc 24519515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 21268447 - 21268551
Alignment:
Q  104 tattattccctagtattctagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattctt 203  Q
    ||||||||  |||| ||||||||||||| | |||||||| |||| |||||||  |||||| |||||||   |  ||||||||| ||||||||||||||||    
T  21268447 tattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattcttcaccattctagagacttccatattattctt 21268546  T
Q  204 catca 208  Q
    |||||    
T  21268547 catca 21268551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 36377471 - 36377537
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattc 231  Q
    |||||||||||||||||||||| |||| ||||||||||| |   ||||||||||||||| |||||||    
T  36377471 attattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattc 36377537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 36379756 - 36379822
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattc 231  Q
    |||||||||||||||||||||| |||| ||||||||||| |   ||||||||||||||| |||||||    
T  36379756 attattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattc 36379822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 36377470 - 36377571
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||||| ||||| | |||||||  |||| |||||||| |||||| ||||||| | |  ||||||||| ||||||||||||||||    
T  36377470 tattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattccttagtattctagagtcttccatattattctt 36377569  T
Q  234 ca 235  Q
    ||    
T  36377570 ca 36377571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 36379755 - 36379856
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||||| ||||| | |||||||  |||| |||||||| |||||| |||||||   |  ||||||||| ||||||||||||||||    
T  36379755 tattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattctt 36379854  T
Q  234 ca 235  Q
    ||    
T  36379855 ca 36379856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 4879172 - 4879138
Alignment:
Q  178 attctagagtcttccatattattcttcatcattct 212  Q
    ||||||||| |||||||||||||||||||||||||    
T  4879172 attctagagacttccatattattcttcatcattct 4879138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 29833281 - 29833471
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833281 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 29833380  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29833381 tagagacttctatattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattcttcatcattct 29833471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 734784 - 734974
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  734784 atactctagtacataaacctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttgttattccctagtattc 734883  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  734884 tagagacttctatattattctttagtcttctaaagacttccacattattccctagtattctagagtcttccatattattcttcatcattct 734974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 2404033 - 2404223
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2404033 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattc 2404132  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||||| || |||||||||||||||||    
T  2404133 tagagacttctatattattctttagtcttctagagatttccacattattctctagtatcctagagtcttctattttattcttcatcattct 2404223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 2416660 - 2416791
Alignment:
Q  78 tatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttct-agaaacttccacattattccctag 176  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||||||| || |    
T  2416660 tatttagtagtatctagtagcttccttattattccctagtattctagagagttctatattattctgtagtcttctgagagacttccacattattctctgg 2416759  T
Q  177 tattctagagtcttccatattattcttcatca 208  Q
    ||| ||||||||||| || |||||||||||||    
T  2416760 tatcctagagtcttctattttattcttcatca 2416791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 8933755 - 8933912
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctt------atttagtag--tgtctagtagcttccttattattccc 113  Q
    |||||||||| |||| | |||||||||||||||||  |||||| || ||||||||||      |||||||||  |||||| ||||||||||||||||||     
T  8933755 atactctagttcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtgtctaatagcttccttattattcca 8933854  T
Q  114 tagtattctagagacttctatattattctttagtcttctagaaacttccacattattc 171  Q
    ||||||| |||||||||| ||||| ||||||||| || |||||| ||||| |||||||    
T  8933855 tagtattttagagacttccatatttttctttagttttttagaaatttccatattattc 8933912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 419213 - 419284
Alignment:
Q  90 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaaacttc 161  Q
    ||||||||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| ||||||| |||||    
T  419213 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 419284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 29833363 - 29833466
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||||| ||||| | |||||||  |||| |||||||| |||||| ||||||||  |  ||||||||| ||||||||||||||||    
T  29833363 tattattccctagtattctagagacttctatattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattctt 29833462  T
Q  234 catc 237  Q
    ||||    
T  29833463 catc 29833466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 2404116 - 2404183
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattct 232  Q
    |||||||||||||||||||||| |||| ||||||||||| |   ||||||||| ||||| ||||||||    
T  2404116 attattccctagtattctagagacttctatattattctttagtcttctagagatttccacattattct 2404183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 734868 - 734933
Alignment:
Q  166 ttattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattc 231  Q
    ||||||||||||||||||||| |||| ||||||||||| |   ||||| ||||||||| |||||||    
T  734868 ttattccctagtattctagagacttctatattattctttagtcttctaaagacttccacattattc 734933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 18353788 - 18353733
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgct 77  Q
    |||||||||| |||| | ||||||||||||||||||| ||||| || |||||||||    
T  18353788 atactctagttcatatgactagaaggatctagaaaagataagattttcctagtgct 18353733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 419221 - 419266
Alignment:
Q  188 cttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  419221 cttccttattattctttaacattatagagacttccatattattctt 419266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 734876 - 734969
Alignment:
Q  144 tagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    |||| ||||||| ||||| | |||||||  |||| ||||| || |||||| |||||||   |  ||||||||| ||||||||||||||||||||    
T  734876 tagtattctagagacttctatattattctttagtcttctaaagacttccacattattccctagtattctagagtcttccatattattcttcatc 734969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 8933846 - 8933918
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    |||||||| ||||||| ||||| |||||||||| ||||| |   || |||| | |||||||||||||||||||    
T  8933846 attattccatagtattttagagacttccatatttttctttagttttttagaaatttccatattattcttcatc 8933918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 5e-94; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 31486861 - 31486671
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31486861 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 31486762  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31486761 tagagacttctatattattctctagtcttctagaggcttccacattattccctagtattctagagtcttccatattattcttcaccattct 31486671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 31489145 - 31488955
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31489145 atactctagtacataagcttagaaggatctagaaaagctaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 31489046  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31489045 tagagacttctatattattctttagtcttttagagacttccacattattccctagtattctagagtcttccatattattcttcaccattct 31488955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 34576802 - 34576968
Alignment:
Q  18 atgaatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgc-----------ttatttagtag--tgtctagtagcttcctt 104  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||| ||| |||||||           |||||||||||  |||| |||||||||||     
T  34576802 atgaatactctagttcatatgactagaaggatctagaaaagttaagatttctctagtgcgtaattttattttatttagtagagtgtccagtagcttcctc 34576901  T
Q  105 attattccctagtattctagagacttctatattattctttagtcttctagaaacttccacattattc 171  Q
     ||||||  ||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  34576902 gttattctttagtattttagagacttccatattattctttagtgttctagagacttccacattattc 34576968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 23859972 - 23859767
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgc-----------ttatttagtag--tgtctagtagcttccttatta 108  Q
    |||||||||| |||||| ||||||||||||||||||| ||||| ||| ||||||            |||||||||||  ||| |||||||||||||||||    
T  23859972 atactctagttcataagactagaaggatctagaaaagctaagatttctctagtgtctaattttattttatttagtagaatgtttagtagcttccttatta 23859873  T
Q  109 ttccctagtattctagagacttctatattattctttagtcttctaga----aacttccacattattccctagtattctagagtcttccatattattcttc 204  Q
    || | |||||||||||||||| | ||||||||||||||| |||||||     | ||||| |||||||  |||||||||||||| ||||||||  ||||||    
T  23859872 tttcatagtattctagagactcccatattattctttagtgttctagaggcttaattccatattattcattagtattctagagtgttccatatctttcttc 23859773  T
Q  205 atcatt 210  Q
    ||||||    
T  23859772 atcatt 23859767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 15729981 - 15729871
Alignment:
Q  101 ccttattattccctagtattctagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattatt 200  Q
    |||||||||||  ||||||||||||||||||  || ||||||||  | | ||||| |||||||||||||||  || | |||||||| | |||||||||||    
T  15729981 ccttattattctttagtattctagagacttccttaatattcttttatgt-ctagagacttccacattattctttattgttctagagacatccatattatt 15729883  T
Q  201 cttcatcattct 212  Q
    ||||||||||||    
T  15729882 cttcatcattct 15729871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 29801871 - 29801773
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatatta-ttcttcatcattctagagacttccatattattc 231  Q
    |||||||||||||| ||||||| ||||||  |||||||  | || |||||||| ||||||||||| || || || ||||||||||||||||||||||||    
T  29801871 tattattctttagtattctagatacttccctattattctttggtgttctagagacttccatattatttttttattattctagagacttccatattattc 29801773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 201
Target Start/End: Complemental strand, 29801940 - 29801773
Alignment:
Q  40 ctagaaggatctagaaaagttaagacttccctagtgctta--tttagtagtgtctagtagct----tccttattattccctagtattctagagacttcta 133  Q
    |||||||||| ||||||  |||||| ||  | ||||||||  ||||| ||||||||||||||    ||||||||||||  |||||||||||| |||||      
T  29801940 ctagaaggatttagaaacattaagatttttccagtgcttaattttag-agtgtctagtagctagattccttattattctttagtattctagatacttccc 29801842  T
Q  134 tattattctttagtcttctagaaacttccacatta-ttccctagtattctagagtcttccatattattc 201  Q
    ||||||||||| || ||||||| ||||||| |||| ||   || |||||||||| ||||||||||||||    
T  29801841 tattattctttggtgttctagagacttccatattatttttttattattctagagacttccatattattc 29801773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 34576903 - 34576979
Alignment:
Q  136 ttattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||||| || |||| ||||||| |||||||  |||| |||||||| |||||| ||||||||||||||||||    
T  34576903 ttattctttagtattttagagacttccatattattctttagtgttctagagacttccacattattcttcatcattct 34576979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 31486779 - 31486678
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||||| ||||| | ||||||| ||||| |||||||| |||||| |||||||   |  ||||||||| ||||||||||||||||    
T  31486779 tattattccctagtattctagagacttctatattattctctagtcttctagaggcttccacattattccctagtattctagagtcttccatattattctt 31486680  T
Q  234 ca 235  Q
    ||    
T  31486679 ca 31486678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 34576911 - 34576974
Alignment:
Q  174 tagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    ||||||| ||||| |||||||||||||||| |   ||||||||||||||| |||||||||||||    
T  34576911 tagtattttagagacttccatattattctttagtgttctagagacttccacattattcttcatc 34576974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 15729933 - 15729876
Alignment:
Q  180 tctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    ||||||| |||||| ||||||||| ||  |||||||||| ||||||||||||||||||    
T  15729933 tctagagacttccacattattctttattgttctagagacatccatattattcttcatc 15729876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 31489063 - 31488962
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||||| ||||| | |||||||  |||| || ||||| |||||| |||||||   |  ||||||||| ||||||||||||||||    
T  31489063 tattattccctagtattctagagacttctatattattctttagtcttttagagacttccacattattccctagtattctagagtcttccatattattctt 31488964  T
Q  234 ca 235  Q
    ||    
T  31488963 ca 31488962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 36464429 - 36464619
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464429 atactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 36464528  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  36464529 tagagacttctatattattatttagtgttctagagacttccacattattctctagtattctagagtcttccatattatttttcatcattct 36464619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 3934932 - 3934742
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3934932 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattc 3934833  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    ||||| |||| ||||||||||||||||||||||| ||||||| |||||||   |  ||||||||| |||||||||||||||||||||||||    
T  3934832 tagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatattattcttcatcattct 3934742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 8414721 - 8414886
Alignment:
Q  47 gatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctttag 146  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8414721 gatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagtttccttattattccctagtattctagagacttctatattattctttag 8414820  T
Q  147 tcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8414821 tgttctagatacttccacattattctctagtattctagagtcttccatattattcttcatcattct 8414886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 3932693 - 3932507
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3932693 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattc 3932594  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatca 208  Q
    ||||| |||| ||||||||||||||||||||||| ||||||| |||||||   |  ||||||||| |||||||||||||||||||||    
T  3932593 tagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatattattcttcatca 3932507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 3052178 - 3051993
Alignment:
Q  26 tctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattcc----ctagtattc 121  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||      |||||||||    
T  3052178 tctagtacataaaactagaaggatctagaaaagttaagacttccctaatgcttatttagtagtgtctagtagcttccttattatttattatctagtattc 3052079  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatc 207  Q
    |||||||||||||||||||||||||| || |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  3052078 tagagacttctatattattctttagtgttatagagacttcgacattattctctagtattctagagtcttccatattattcttcatc 3051993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 8733703 - 8733849
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8733703 atactctagtacataagcctagaaggatctagaaaagttaagac---cctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 8733799  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattc 171  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  8733800 tagagacttctatattattctttagtgttctagagacttccatattattc 8733849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 19789047 - 19788927
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19789047 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 19788948  T
Q  122 tagagacttctatattattct 142  Q
    |||||||||| | ||||||||    
T  19788947 tagagacttccacattattct 19788927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 19786741 - 19786621
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19786741 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctaatattc 19786642  T
Q  122 tagagacttctatattattct 142  Q
    |||||||||| | ||||||||    
T  19786641 tagagacttccacattattct 19786621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 16497078 - 16497225
Alignment:
Q  86 agtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctaga 185  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||| | |||||||  | |||| |||||||   |  ||||||||    
T  16497078 agtgtctagtagcttccttattattccatagtattctagaaacttccacattattctttattattctagaggcatccatattattcttgatcattctaga 16497177  T
Q  186 gtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||    
T  16497178 gacttccatattattcttgatcattctagagacttccatattattctt 16497225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 42678776 - 42678933
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctt------atttagtag--tgtctagtagcttccttattattccc 113  Q
    |||||||||  |||| | |||||||||||||||||  |||||| || ||||||||||      |||||||||  |||||||||||||||||||||||||     
T  42678776 atactctaggtcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtgtctagtagcttccttattattcca 42678875  T
Q  114 tagtattctagagacttctatattattctttagtcttctagaaacttccacattattc 171  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  42678876 tagtattttagagacttccatattattctttagttttctagaaacttccatattattc 42678933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 3932611 - 3932508
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| |||||||  |||||| |||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3932611 tattattccctagtattctagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatattattctt 3932512  T
Q  234 catc 237  Q
    ||||    
T  3932511 catc 3932508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 3934850 - 3934747
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| |||||||  |||||| |||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3934850 tattattccctagtattctagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatattattctt 3934751  T
Q  234 catc 237  Q
    ||||    
T  3934750 catc 3934747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 16535272 - 16535377
Alignment:
Q  128 cttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatatt 227  Q
    ||||| ||||||||  |||| ||||||| |||||||||||||||  || |||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  16535272 cttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattctatagacttccatatt 16535371  T
Q  228 attctt 233  Q
    ||||||    
T  16535372 attctt 16535377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 16630390 - 16630285
Alignment:
Q  128 cttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatatt 227  Q
    ||||| ||||||||  |||| ||||||| |||||||||||||||  || |||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  16630390 cttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattctatagacttccatatt 16630291  T
Q  228 attctt 233  Q
    ||||||    
T  16630290 attctt 16630285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 16535260 - 16535383
Alignment:
Q  86 agtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctaga 185  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| | ||||||||||| | |||||||  |||||| |||||||   |  |||||| |    
T  16535260 agtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattctata 16535359  T
Q  186 gtcttccatattattcttcatcat 209  Q
    | |||||||||||||||| |||||    
T  16535360 gacttccatattattcttgatcat 16535383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 16630402 - 16630279
Alignment:
Q  86 agtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctaga 185  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| | ||||||||||| | |||||||  |||||| |||||||   |  |||||| |    
T  16630402 agtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattctata 16630303  T
Q  186 gtcttccatattattcttcatcat 209  Q
    | |||||||||||||||| |||||    
T  16630302 gacttccatattattcttgatcat 16630279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 8733783 - 8733855
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    |||||||||||||||||||||| |||| ||||||||||| |   |||||||||||||||||||||||||||||    
T  8733783 attattccctagtattctagagacttctatattattctttagtgttctagagacttccatattattcttcatc 8733855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 42678867 - 42678939
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    |||||||| ||||||| ||||| |||||||||||||||| |   ||||||| |||||||||||||||||||||    
T  42678867 attattccatagtattttagagacttccatattattctttagttttctagaaacttccatattattcttcatc 42678939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 8414778 - 8414881
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||||| ||||| | |||||||  |||| |||||||  |||||| ||||||||  |  ||||||||| ||||||||||||||||    
T  8414778 tattattccctagtattctagagacttctatattattctttagtgttctagatacttccacattattctctagtattctagagtcttccatattattctt 8414877  T
Q  234 catc 237  Q
    ||||    
T  8414878 catc 8414881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 8733782 - 8733856
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatca 208  Q
    ||||||||  |||| ||||||| ||||| | |||||||  |||| |||||||| |||||||||||||||||||||    
T  8733782 tattattccctagtattctagagacttctatattattctttagtgttctagagacttccatattattcttcatca 8733856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 42678866 - 42678944
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    ||||||||  |||| || |||| ||||||| |||||||  |||| |||||||  |||||||||||||||||||||||||    
T  42678866 tattattccatagtattttagagacttccatattattctttagttttctagaaacttccatattattcttcatcattct 42678944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 16497139 - 16497234
Alignment:
Q  117 tattctagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||||| | || ||||||||||| |   ||||||| ||||||| |||||||   |  ||||||||| |||||||||||||||| ||||||||    
T  16497139 tattctagaggcatccatattattcttgatcattctagagacttccatattattcttgatcattctagagacttccatattattcttgatcattct 16497234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 36464511 - 36464614
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||||| ||||| | ||||||   |||| |||||||| |||||| ||||||||  |  ||||||||| ||||||||||||| ||    
T  36464511 tattattccctagtattctagagacttctatattattatttagtgttctagagacttccacattattctctagtattctagagtcttccatattattttt 36464610  T
Q  234 catc 237  Q
    ||||    
T  36464611 catc 36464614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 3052086 - 3051993
Alignment:
Q  144 tagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    |||| ||||||| ||||| | |||||||  |||| || ||||| |||| | ||||||||  |  ||||||||| ||||||||||||||||||||    
T  3052086 tagtattctagagacttctatattattctttagtgttatagagacttcgacattattctctagtattctagagtcttccatattattcttcatc 3051993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 19788964 - 19788927
Alignment:
Q  165 attattccctagtattctagagtcttccatattattct 202  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  19788964 attattccctagtattctagagacttccacattattct 19788927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 45167049 - 45166859
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45167049 atactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 45166950  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    || ||||||||||||||||||||||||||||||| ||||||| |||||||   |  ||||||||| |||||||||||||||||||||||||    
T  45166949 taaagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattcttcatcattct 45166859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 45162157 - 45161971
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45162157 atactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagtagtgtctagtagctttcttattattccctagtattc 45162058  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatca 208  Q
    || ||||||||||||||||||||||||||||||| ||||||| |||||||   |  ||||||||| |||||||||||||||||||||    
T  45162057 taaagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattcttcatca 45161971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 42468645 - 42468794
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  42468645 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccccagtattc 42468744  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattc 171  Q
    ||||| |||| ||||||||||| |   ||||||| ||||||| |||||||    
T  42468745 tagagtcttccatattattcttcaccattctagagacttccatattattc 42468794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 42470974 - 42471123
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  42470974 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattcccaagtattc 42471073  T
Q  122 tagagacttctatattattctttagtcttctagaaacttccacattattc 171  Q
    ||||| |||| ||||||||||| |   ||||||| ||||||| |||||||    
T  42471074 tagagtcttccatattattcttcaccattctagagacttccatattattc 42471123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 50855967 - 50856088
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattc 121  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50855967 atactctggtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccatagtattc 50856066  T
Q  122 tagagacttctatattattctt 143  Q
    |||||||||| |||||||||||    
T  50856067 tagagacttccatattattctt 50856088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 42468728 - 42468800
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42468728 attattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattcttcatc 42468800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 42471057 - 42471129
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42471057 attattcccaagtattctagagtcttccatattattcttcaccattctagagacttccatattattcttcatc 42471129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 45162075 - 45161972
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||| | ||||| | |||||||  |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  45162075 tattattccctagtattctaaagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattctt 45161976  T
Q  234 catc 237  Q
    ||||    
T  45161975 catc 45161972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 45166967 - 45166864
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||||||  |||| ||||| | ||||| | |||||||  |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  45166967 tattattccctagtattctaaagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattctt 45166868  T
Q  234 catc 237  Q
    ||||    
T  45166867 catc 45166864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 8739368 - 8739249
Alignment:
Q  25 ctctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattct 122  Q
    ||||||| |||| | |||||||||||||||||  |||||| ||||||||||| ||  |||||| |||| ||||||||||||||||||||  |||||||||    
T  8739368 ctctagttcatatgactagaaggatctagaaacattaagatttccctagtgcataattttagt-gtgtatagtagcttccttattattcattagtattct 8739270  T
Q  123 agagacttctatattattctt 143  Q
    |||||| || | |||||||||    
T  8739269 agagacatccacattattctt 8739249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 19429279 - 19429334
Alignment:
Q  18 atgaatactctagtacataagcctagaaggatctagaaaagttaagacttccctag 73  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  19429279 atgaatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 19429334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 50856050 - 50856097
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  50856050 attattccatagtattctagagacttccatattattcttcatcattct 50856097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 42468771 - 42468805
Alignment:
Q  178 attctagagtcttccatattattcttcatcattct 212  Q
    ||||||||| |||||||||||||||||||||||||    
T  42468771 attctagagacttccatattattcttcatcattct 42468805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 50856063 - 50856092
Alignment:
Q  208 attctagagacttccatattattcttcatc 237  Q
    ||||||||||||||||||||||||||||||    
T  50856063 attctagagacttccatattattcttcatc 50856092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 18966398 - 18966518
Alignment:
Q  90 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaaacttccacattattccctagtattct--agagt 187  Q
    |||||||||| ||||||||||  |||||||||||||||||||  ||||||||||| || ||||||| |||||||||||||||  |||||||||  ||||     
T  18966398 tctagtagctaccttattattatctagtattctagagacttccctattattctttggtgttctagagacttccacattattctttagtattctagagaga 18966497  T
Q  188 cttccatattattcttcatca 208  Q
    |||||||||||||||||||||    
T  18966498 cttccatattattcttcatca 18966518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 39578315 - 39578235
Alignment:
Q  128 cttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatca 208  Q
    |||| ||||||||||||||| ||||  |||||| ||||||||||  ||||||||||||||||||||||| |||||||||||    
T  39578315 cttccatattattctttagtgttctgtaaactttcacattattctttagtattctagagtcttccatatcattcttcatca 39578235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 18966412 - 18966517
Alignment:
Q  134 tattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattctagag--acttccatattattc 231  Q
    ||||||| | |||| ||||||| ||||||  |||||||  | || |||||||| |||||| ||||||||| |  |||||||||  |||||||||||||||    
T  18966412 tattattatctagtattctagagacttccctattattctttggtgttctagagacttccacattattctttagtattctagagagacttccatattattc 18966511  T
Q  232 ttcatc 237  Q
    ||||||    
T  18966512 ttcatc 18966517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 1701139 - 1701104
Alignment:
Q  40 ctagaaggatctagaaaagttaagacttccctagtg 75  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1701139 ctagaaggatctagaaaagttaagatttccctagtg 1701104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 18966317 - 18966374
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta 79  Q
    |||||||||||| || | |||||||||||||||||  |||||| || |||||||||||    
T  18966317 atactctagtacgtatgactagaaggatctagaaacattaagattttcctagtgctta 18966374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 73153 - 73069
Alignment:
Q  124 gagacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatca 208  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||   |  ||||||||| |||||||||||||||||||||    
T  73153 gagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattcttcatca 73069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 73142 - 73070
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattcttcatc 237  Q
    |||||||  |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  73142 attattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattcttcatc 73070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 21199275 - 21199146
Alignment:
Q  22 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctt------atttagtag--tgtctagtagcttccttattattccc 113  Q
    |||||| ||| |||| | |||||||||||||||||  |||||| ||  |||||||||      |||||||||  ||| |||||||||||||||||||||     
T  21199275 atactccagttcatatgactagaaggatctagaaacattaagatttaactagtgctttattttatttagtagagtgtatagtagcttccttattattcca 21199176  T
Q  114 tagtattctagagacttctatattattctt 143  Q
    |||||||||||||||||| |||||||||||    
T  21199175 tagtattctagagacttccatattattctt 21199146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 21199184 - 21199137
Alignment:
Q  165 attattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  21199184 attattccatagtattctagagacttccatattattcttcatcattct 21199137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 21199171 - 21199142
Alignment:
Q  208 attctagagacttccatattattcttcatc 237  Q
    ||||||||||||||||||||||||||||||    
T  21199171 attctagagacttccatattattcttcatc 21199142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 29209 - 29122
Alignment:
Q  125 agacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    ||||||| ||||||||||| | | ||||||| ||||||||||| |||  |||| || ||||| |||||||||||||||||||||||||    
T  29209 agacttccatattattcttgaatgttctagagacttccacattgttctttagtgttttagagacttccatattattcttcatcattct 29122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 31527 - 31440
Alignment:
Q  125 agacttctatattattctttagtcttctagaaacttccacattattccctagtattctagagtcttccatattattcttcatcattct 212  Q
    ||||||| ||||||||||| ||| ||||||| ||||||||||| |||  |||| || |||||  ||||||||||||||||||||||||    
T  31527 agacttccatattattcttgagtgttctagagacttccacattgttctttagtgttttagagagttccatattattcttcatcattct 31440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 29314 - 29261
Alignment:
Q  26 tctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta 79  Q
    ||||||||||| | |||||||||||||||||  |||||| ||||||||||||||    
T  29314 tctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 29261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 31627 - 31574
Alignment:
Q  26 tctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta 79  Q
    ||||||||||| | |||||||||||||||||  |||||| ||||||||||||||    
T  31627 tctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 11358 - 11287
Alignment:
Q  90 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaaacttc 161  Q
    ||||||||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| ||||||| |||||    
T  11358 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 11287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 11350 - 11305
Alignment:
Q  188 cttccatattattcttcatcattctagagacttccatattattctt 233  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  11350 cttccttattattctttaacattatagagacttccatattattctt 11305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University