View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19273_low_9 (Length: 280)
Name: NF19273_low_9
Description: NF19273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19273_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 9526220 - 9526076
Alignment:
| Q |
121 |
agaaatgaaaaacctgtgcaggaacatgctcataatatataagagtgaaaccactgtcacaactaatgttggctgcgccatcaacacaaactatagagtt |
220 |
Q |
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| T |
9526220 |
agaaatgaaaaacctgtgcaggaacatgctcataatatataagagtgaaaccactgtcacaactaatgttggctacgccatcaacacaaactatagagtt |
9526121 |
T |
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| Q |
221 |
tcaactttaaccatatgcaaccaaactagcatgcatagccacagg |
265 |
Q |
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| T |
9526120 |
tcaactttaaccatatgcaaccaaactagcatgcatagccacagg |
9526076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 9526262 - 9526216
Alignment:
| Q |
19 |
tttcacctctaagaaccttttaatctttaaccccactcctagagaaa |
65 |
Q |
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| T |
9526262 |
tttcacctctaagaaccttttaatctttaaccccactcctagagaaa |
9526216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 36871877 - 36871906
Alignment:
| Q |
235 |
atgcaaccaaactagcatgcatagccacag |
264 |
Q |
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| T |
36871877 |
atgcaaccaaactagcatgcatagccacag |
36871906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 36874405 - 36874377
Alignment:
| Q |
235 |
atgcaaccaaactagcatgcatagccaca |
263 |
Q |
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| T |
36874405 |
atgcaaccaaactagcatgcatagccaca |
36874377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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