View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19274_high_1 (Length: 483)
Name: NF19274_high_1
Description: NF19274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19274_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Original strand, 9105105 - 9105564
Alignment:
| Q |
19 |
catttgtctttcaattttgaaatatcatgagtatcaggaatatcccattgttcctatgttatatagcagataaaagagttagtgtatggaaataatataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105105 |
catttgtctttcaattttgaaatatcatgagtatcaggaatatcccattgttcctatgttatatagcagataaaagagttagtgtatggaaataatataa |
9105204 |
T |
|
| Q |
119 |
ttaagtggtacaactgacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105205 |
ttaagtggtacaactgacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaa |
9105304 |
T |
|
| Q |
219 |
atactgactttgcttctagcaatgtaacccacatgacttttgaannnnnnnctgttttcccctaaaggctttttggtatattgatcgaagtcaatcggaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
9105305 |
atactgactttgcttctagcaatgtaacccacatgacttttgaatttttttcagttttcccctaaaggctttttggtatattgatcaaagtcaatcagaa |
9105404 |
T |
|
| Q |
319 |
tcttttcaccattcaaacgtttaagcaaaaaatgtgccattcgcgttgcacctctaactctctttttggtaggctcggtaattttctcagtttgtggagg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105405 |
tcttttcaccattcaaacgtttaagcaaaaaatgtgccattcgcgttgcacctctaactctctttttggtaggctcggtaattttctcagtttgtggagg |
9105504 |
T |
|
| Q |
419 |
acctgatgcactcacgagtgtgttgactctattttcggtaggctgatcattcatctcact |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9105505 |
acctgatgcactcacgagtgtgttgactctattttcggtaggctgatcgttcatctcact |
9105564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 41076534 - 41076322
Alignment:
| Q |
19 |
catttgtctttcaattttgaaatatcatgagtatcaggaatatcccattgttcctatgttatatagcagataaaagagttagtgtatggaaataatataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41076534 |
catttgtctttcaattttgaaatatcatgagtatttggaatatcccattgttcctgtgttatatagcagataaaagagttagtgcatggaaataatataa |
41076435 |
T |
|
| Q |
119 |
ttaagtggtacaactgacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaa |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||| |||||| ||| |
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| T |
41076434 |
ttaagtgttacaactgacaatcataaatagtattaccatgatatcttcctaaatctggtctttaacagtctcgcttacaagatcccaatgatccacaaaa |
41076335 |
T |
|
| Q |
219 |
atactgactttgc |
231 |
Q |
| |
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||||||||||||| |
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|
| T |
41076334 |
atactgactttgc |
41076322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 22819567 - 22819880
Alignment:
| Q |
19 |
catttgtctttcaattttgaaatatcatgagtatca---ggaatatcccattgttcctatgttatatagcagataaaagagttagtgtatggaaataata |
115 |
Q |
| |
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||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
22819567 |
catttgtctttcaatttataaatatcatgagtattatttggaatatcccattgttcctgtgttatatagcagataaaagagttagtgtacggaaataata |
22819666 |
T |
|
| Q |
116 |
taattaagtggtacaactgacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccacc |
215 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||| | |||| |||||| ||||||||||| || |||| |
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| T |
22819667 |
taattaagtgttacaactgacaatcgtaaatagtaataccatgatatcttctcaaatctggtctttaatagtc-cgcttataagatcccaatgattcacc |
22819765 |
T |
|
| Q |
216 |
aaaatactgactttgcttctagcaatgtaacccacatgacttttgaa-nnnnnnnctgttttcccctaaaggctttttggtatattgatcgaagtcaatc |
314 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||| || |||||| |||||| |
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| T |
22819766 |
aaaatactaactttgcttctagcaatggaacccacatgacttttgaatttttcttctgtattcccctaaaggcgttttggttcatacatcgaattcaatc |
22819865 |
T |
|
| Q |
315 |
ggaatcttttcacca |
329 |
Q |
| |
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|| ||| |||||||| |
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|
| T |
22819866 |
ggtatcctttcacca |
22819880 |
T |
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Back To:
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