View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19274_high_2 (Length: 441)
Name: NF19274_high_2
Description: NF19274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19274_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 9 - 427
Target Start/End: Complemental strand, 35244083 - 35243665
Alignment:
| Q |
9 |
aagaatatcatatcactatagctagagatggtgagcactttgcatggccatgctacaaatatctgatacccggttagagcatcaatcatttcatgccaca |
108 |
Q |
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| T |
35244083 |
aagaaaatcatatcactatagctagagatggtgagcactttgcagggccatgctacaaatatctgatacccggttagagcatcaatcatttcatgccaca |
35243984 |
T |
|
| Q |
109 |
tcaagtagtgactgctaaatactaattacacatttatttatctgcgtnnnnnnnnnggtttcttagtgtgtggatttagatgaaaataattttataagaa |
208 |
Q |
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| T |
35243983 |
tcaagtagtgactgctaaatactaattacacatttatttatctgcgtaaaaaaaaaggtttctaagtgtgtggatttagatgaaaataattttataagaa |
35243884 |
T |
|
| Q |
209 |
aatctgtatgataaaatcaatactggtattatgtgtcagatggataacatgtctgtgacatcttttgttacaatttcagggctagtgatggctttaattg |
308 |
Q |
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| T |
35243883 |
aatctgcatgataaaatcaatactggtattatgtgtcagatggataacatgtctgtgacatcttttgttacaatttcagggctagtgatggctttaattg |
35243784 |
T |
|
| Q |
309 |
gttctctcctcagtgtacttgtggtaagcatacaattcagttaaatattaattgcggtcaatatctagcaatgtataaagaacttgcatgtactgttctc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35243783 |
gttctctcctcagtgtacttgtggtaagcatacaattcagttaaatattaattgcggtcaatatctagcaatgtataaagaacttgcatgtactgttctc |
35243684 |
T |
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| Q |
409 |
ttttaaggaatatgatttg |
427 |
Q |
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| T |
35243683 |
ttttaaggaatatgatttg |
35243665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 35228422 - 35228303
Alignment:
| Q |
236 |
attatgtgtcagatggataacatgtctgtgacatcttttgttacaatttcagggctagtgatggctttaattggttctctcctcagtgtacttgtggtaa |
335 |
Q |
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||||||||||||||||| |||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35228422 |
attatgtgtcagatggaaaacatggccctgacatcttttattataatttcagggctagtgatggctttaattggttctctcctgagtgtacttgtggtaa |
35228323 |
T |
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| Q |
336 |
gcatacaattcagttaaata |
355 |
Q |
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||||||| ||| |||||||| |
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| T |
35228322 |
gcatacatttcggttaaata |
35228303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 35235308 - 35235236
Alignment:
| Q |
23 |
actatagctagagatggtgagcactttgcatggccatgctacaaatatctgatacccggttagagcatcaatc |
95 |
Q |
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|||||||||||||||||| ||||||| ||| ||| ||||||||| |||||||||| ||| |||| |||||||| |
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| T |
35235308 |
actatagctagagatggtcagcacttagcagggctatgctacaattatctgatactcggctagaacatcaatc |
35235236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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