View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19274_high_6 (Length: 287)
Name: NF19274_high_6
Description: NF19274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19274_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 35 - 271
Target Start/End: Complemental strand, 37829815 - 37829579
Alignment:
| Q |
35 |
gaggctaagggaaatgacattataagtatggtcacattgaacaccaacccatgagcatggatcggaatcagaagccttccaactagagttgattagcgga |
134 |
Q |
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| T |
37829815 |
gaggctaagggaaatgacattataagtatggtcacattgaacaccaacccatgagcatggatcggaatcagaagccttccaactagagttgattagcgga |
37829716 |
T |
|
| Q |
135 |
ggaacaaatgtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatgcaagaaggaaataatcaacaacaagattg |
234 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
37829715 |
ggaacaaaggtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatagaagaaggaaataatcgacaacaagattg |
37829616 |
T |
|
| Q |
235 |
tgataattttactgctacaactaattctagtcattta |
271 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
37829615 |
tgataattttactgctacaactaattctagtcattta |
37829579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 106 - 271
Target Start/End: Complemental strand, 37821502 - 37821337
Alignment:
| Q |
106 |
aagccttccaactagagttgattagcggaggaacaaatgtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821502 |
aagccttccaactagagttgattagcggaggaacaaaggtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccata |
37821403 |
T |
|
| Q |
206 |
caagaaggaaataatcaacaacaagattgtgataattttactgctacaactaattctagtcattta |
271 |
Q |
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| T |
37821402 |
gaagaaggaaataatcgacaacaagattgtgataattttactgctacaactaattctagtcattta |
37821337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 44 - 271
Target Start/End: Complemental strand, 37841129 - 37840905
Alignment:
| Q |
44 |
ggaaatgacattataagtatggtcacattgaacaccaacccatgagcatggatcggaatcagaagccttccaactagagttgattagcggaggaacaaat |
143 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
37841129 |
ggaaatgacattgttggtatggtcacattgaacaccaacccatgagcatggaattgaatcagaagctttccaactagagttgatgagaggaggaacaaag |
37841030 |
T |
|
| Q |
144 |
gtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatgcaagaaggaaataatcaacaacaagattgtgataattt |
243 |
Q |
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| T |
37841029 |
gtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagtgcaaaaccaccatgcaagaaggaaacaat---caacaagagtttgataattc |
37840933 |
T |
|
| Q |
244 |
tactgctacaactaattctagtcattta |
271 |
Q |
| |
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|||| ||||||| ||||||||||||||| |
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| T |
37840932 |
tactactacaacaaattctagtcattta |
37840905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 37848867 - 37848703
Alignment:
| Q |
62 |
atggtcacattgaacaccaacccatgagcatggatcggaatcagaagccttccaactagagttgattagcggaggaacaaatgtccaacgtgtcaagagt |
161 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||| | |||||||||| ||||| ||||| |||| |
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| T |
37848867 |
atggtcacatcgaacaccaacccatgagcatggattggaatcagaaggattccagctagagtcgatgataggaggaacaatggtccagtctgtcatgagt |
37848768 |
T |
|
| Q |
162 |
gacatcaaagtcaaaccatcagaggtaagagcagtagcaccatgcaagaaggaaataatcaacaa |
226 |
Q |
| |
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|||| || ||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||| |
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| T |
37848767 |
gacaacagagtcaaaccatcatagttaagagcagtagcaccatgcaaaaaggaaatagtcaacaa |
37848703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 65 - 270
Target Start/End: Complemental strand, 37835486 - 37835284
Alignment:
| Q |
65 |
gtcacattgaacaccaacccatgagcatggatcggaatcagaagccttccaactagagttgattagcggaggaacaaatgtccaacgtgtcaagagtgac |
164 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||||| | ||||||| ||| ||||| |||||| ||||||| |
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| T |
37835486 |
gtcacattgaacaccaacccatgagcatggagttgaatcagaggcattccaggtagatttgataaaaggaggaataaaagtccagtgtgtcatgagtgac |
37835387 |
T |
|
| Q |
165 |
atcaaagtcaaaccatcagaggtaagagcagtagcaccatgcaagaaggaaataatcaacaacaagattgtgataattttactgctacaactaattctag |
264 |
Q |
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| || |||| |||||||||||||||| | ||| |||||||||||||||||| |||||||| ||| || | |||||||||||||||| |||||| |
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| T |
37835386 |
aacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaaggaaataat---caacaagagtgtaatgaatttactgctacaactagttctag |
37835290 |
T |
|
| Q |
265 |
tcattt |
270 |
Q |
| |
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|||||| |
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| T |
37835289 |
tcattt |
37835284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 35025693 - 35025783
Alignment:
| Q |
123 |
ttgattagcggaggaacaaatgtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatgcaagaagg |
213 |
Q |
| |
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||||| || ||||| ||||| ||||| ||||||||||||||| |||||||| ||||||||| |||||| | | ||||||| ||||||| |
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| T |
35025693 |
ttgatgagaggaggtacaaaggtccagtgtgtcaagagtgacaagaaagtcaacccatcagagttaagagtaaaaccaccatgtaagaagg |
35025783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 36864251 - 36864073
Alignment:
| Q |
64 |
ggtcacattgaacaccaacccatgagcatggatcggaatcagaagccttccaactagagttgattagcggaggaacaaatgtccaacgtgtcaagagtga |
163 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| | ||||||||||| |
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| T |
36864251 |
ggtcgcattgaacaccaaaccatgaacatggatcggaatcagaagccttccagctagagttgatgagaggaggaacaaaggtccagtgagtcaagagtga |
36864152 |
T |
|
| Q |
164 |
catcaaagtcaaaccatcagaggtaagagcagtagcaccatgcaagaaggaaataatcaacaacaagattgtgataatt |
242 |
Q |
| |
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|| ||||||||| |||| |||| |||||| | | |||||||||||||||||||||||| |||||| | ||| |||||| |
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| T |
36864151 |
caacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaaggaaataatcatcaacaatagtgtaataatt |
36864073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 225
Target Start/End: Complemental strand, 12281510 - 12281332
Alignment:
| Q |
45 |
gaaatgacattataagtatggtcacattgaacaccaacccatgagcatggatcggaatcagaagccttccaactagagttgattagcggaggaacaaatg |
144 |
Q |
| |
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||||||||||||| | || |||||||| |||||||||||||||||||||| |||||||| || ||||| | || ||||| | ||||||| ||| | |
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| T |
12281510 |
gaaatgacattatgatta--gtcacattaaacaccaacccatgagcatggagttgaatcagaggcattccaggtggatttgataaaaggaggaataaaag |
12281413 |
T |
|
| Q |
145 |
tccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagagcagtagcaccatgcaagaaggaaataatcaaca |
225 |
Q |
| |
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|||| |||||| || ||||| || |||| |||| ||||||||||| | ||| ||||||||||||||||||||||| |
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| T |
12281412 |
tccagtgtgtcatgaatgacaacagtatcaacccattagaggtaagagtcaaaccactatgcaagaaggaaataatcaaca |
12281332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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