View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19274_low_11 (Length: 250)
Name: NF19274_low_11
Description: NF19274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19274_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 37829971 - 37830213
Alignment:
| Q |
1 |
attcagtggaagtatatcatatagtttgataaagttgcaaaatttaaagtttttaagattgtcttccaatcttctgactggtaaaattccagattcttta |
100 |
Q |
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| T |
37829971 |
attcagtggaagtatatcatatagtttgataaagttgcaaaatttaaagtttttaagattgtcttccaatcttctgactggtaaaattccagattcttta |
37830070 |
T |
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| Q |
101 |
tttgaaattcaatcccttgaagaagtgagcctgcacaataaccttcttagcggcaatatcccaaccaatattggaaacatgactaatctattaaggttgt |
200 |
Q |
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| T |
37830071 |
tttgaaattcaatcccttgaagaagtgagcctgcacaataaccttcttagcggcaatatcccaaccaatattggaaacatgactaatctattaaggttgt |
37830170 |
T |
|
| Q |
201 |
atctacatagtaatatgttttcagggaccattccttcatctct |
243 |
Q |
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| T |
37830171 |
atctacatagtaatatgttttcagggaccattccttcatctct |
37830213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37841294 - 37841531
Alignment:
| Q |
1 |
attcagtggaagtatatcatatagtttgataaagttgcaaaatttaaagtttttaagattgtcttccaatcttctgactggtaaaattccagattcttta |
100 |
Q |
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| T |
37841294 |
attcagtggaaagataccatatagtttgaaaaagttgcaaaatttaaaggttataggactgtcttccaatctgctgactggtgaaattccagattcattg |
37841393 |
T |
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| Q |
101 |
tttgaaattcaatcccttgaagaagtgagcctgcacaataaccttcttagcggcaatatcccaaccaatattggaaacatgactaatctattaaggttgt |
200 |
Q |
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| T |
37841394 |
tttgaaattcattccctcgaagaagtgagcctacacagtaaccttctcagtggccctatcccaacaaatattggaaacttgactcatctattgaggttgt |
37841493 |
T |
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| Q |
201 |
atctacatagtaatatgttttcagggaccattccttca |
238 |
Q |
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| T |
37841494 |
atctacatcgtaatatgttttcagggactattccttca |
37841531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 37849050 - 37849292
Alignment:
| Q |
1 |
attcagtggaagtatatcatatagtttgataaagttgcaaaatttaaagtttttaagattgtcttccaatcttctgactggtaaaattccagattcttta |
100 |
Q |
| |
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||||||||||| ||| |||||| ||||| ||| ||||| || ||| ||||| | |||| |||||||| | |||||||| |||||||||||||||| |
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| T |
37849050 |
attcagtggaaagataccatatactttgaaaaatttgcagaagttacagtttatggcattggcttccaatatgttgactggtgaaattccagattctttg |
37849149 |
T |
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| Q |
101 |
tttgaaattcaatcccttgaagaagtgagcctgcacaataaccttcttagcggcaatatcccaaccaatattggaaacatgactaatctattaaggttgt |
200 |
Q |
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||| |||||||||||||||||||||| |||||||||| |||||| ||||| || ||||||||| |||||||||||| ||||| |||||| ||||||| |
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| T |
37849150 |
tttcaaattcaatcccttgaagaagttagcctgcacagtaacctacttagtggtcctatcccaacaaatattggaaacttgactcgtctattgaggttgt |
37849249 |
T |
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| Q |
201 |
atctacatagtaatatgttttcagggaccattccttcatctct |
243 |
Q |
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| T |
37849250 |
atctatatggtaatcagttgtcagggactattcctacatctct |
37849292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 37835758 - 37835917
Alignment:
| Q |
84 |
aaattccagattctttatttgaaattcaatcccttgaagaagtgagcctgcacaataaccttcttagcggcaatatcccaaccaatattggaaacatgac |
183 |
Q |
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||||||||||||| || ||| |||||| |||| | |||||||| | |||||||| |||||||||||| || |||||| ||||||||||||||| |||| |
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| T |
37835758 |
aaattccagattccttgtttaaaattccatccttggaagaagtaaacctgcacagtaaccttcttagtggtcctatcccgaccaatattggaaacttgac |
37835857 |
T |
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| Q |
184 |
taatctattaaggttgtatctacatagtaatatgttttcagggaccattccttcatctct |
243 |
Q |
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| T |
37835858 |
tcatctattgaggttgtatctatatggtaatcagttgtcagggactattccttcatctct |
37835917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 36864475 - 36864681
Alignment:
| Q |
40 |
aaatttaaagtttttaagattgtcttccaatcttctgactggtaaaattccagattctttatttgaaattcaatcccttgaagaagtgagcctgcacaat |
139 |
Q |
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||||||||||| | | ||||||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36864475 |
aaatttaaagtctatgagattgtcttccaatttgttgactggtgaaattccagattctttatttgaaattccttcccttgaagaagtgagcctgcacaat |
36864574 |
T |
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| Q |
140 |
aaccttcttagcggcaatatcccaaccaatattggaaacatgactaatctattaag---gttgtatctacatagtaatatgttttcagggaccattcctt |
236 |
Q |
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| T |
36864575 |
aaccttcttagtggaaatattccaaccaatattggaaacttgactcatctattgagactgtattatctatatggtaatatgttttcagggactattcctt |
36864674 |
T |
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| Q |
237 |
catctct |
243 |
Q |
| |
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||||||| |
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| T |
36864675 |
catctct |
36864681 |
T |
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