View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19274_low_3 (Length: 428)

Name: NF19274_low_3
Description: NF19274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19274_low_3
NF19274_low_3
[»] chr7 (8 HSPs)
chr7 (1-418)||(25470362-25470779)
chr7 (1-166)||(8759424-8759594)
chr7 (5-137)||(10674951-10675085)
chr7 (3-137)||(23402064-23402198)
chr7 (78-137)||(22955079-22955138)
chr7 (78-137)||(49002446-49002505)
chr7 (92-134)||(5781740-5781782)
chr7 (92-137)||(40382111-40382156)
[»] chr5 (17 HSPs)
chr5 (1-418)||(8762886-8763303)
chr5 (1-175)||(13888291-13888465)
chr5 (7-175)||(3014634-3014793)
chr5 (1-166)||(26412017-26412188)
chr5 (323-418)||(25521533-25521634)
chr5 (1-137)||(25654571-25654706)
chr5 (3-167)||(12080426-12080582)
chr5 (167-227)||(25521615-25521676)
chr5 (92-164)||(10053787-10053867)
chr5 (17-137)||(29766508-29766628)
chr5 (3-167)||(33848039-33848209)
chr5 (78-137)||(22616715-22616774)
chr5 (9-139)||(13381121-13381251)
chr5 (78-137)||(33163737-33163796)
chr5 (274-312)||(13887600-13887638)
chr5 (92-137)||(10237635-10237680)
chr5 (92-133)||(41417360-41417401)
[»] chr6 (3 HSPs)
chr6 (1-175)||(4487746-4487920)
chr6 (1-175)||(25441671-25441845)
chr6 (1-139)||(18306571-18306709)
[»] chr3 (17 HSPs)
chr3 (1-175)||(48154377-48154551)
chr3 (1-166)||(5125407-5125577)
chr3 (1-166)||(29923055-29923226)
chr3 (1-166)||(29972208-29972379)
chr3 (1-164)||(42664012-42664180)
chr3 (1-166)||(11019665-11019835)
chr3 (1-166)||(54607839-54608003)
chr3 (28-139)||(36689672-36689783)
chr3 (15-137)||(32180455-32180577)
chr3 (78-137)||(19606681-19606740)
chr3 (75-137)||(26000754-26000816)
chr3 (3-137)||(38392320-38392454)
chr3 (92-137)||(40640412-40640457)
chr3 (274-312)||(13007168-13007206)
chr3 (138-167)||(43486220-43486249)
chr3 (93-134)||(45879269-45879310)
chr3 (92-137)||(49359409-49359454)
[»] chr4 (11 HSPs)
chr4 (1-175)||(5914960-5915134)
chr4 (1-166)||(14246379-14246550)
chr4 (15-166)||(5813434-5813587)
chr4 (15-137)||(2266561-2266682)
chr4 (7-134)||(17612559-17612686)
chr4 (1-83)||(22721941-22722023)
chr4 (92-137)||(9743812-9743857)
chr4 (92-133)||(54995027-54995068)
chr4 (7-137)||(2570700-2570830)
chr4 (138-166)||(22722061-22722089)
chr4 (1-49)||(37795140-37795188)
[»] chr2 (15 HSPs)
chr2 (1-166)||(7565482-7565649)
chr2 (5-175)||(32652583-32652753)
chr2 (85-169)||(40912464-40912548)
chr2 (1-166)||(6357008-6357179)
chr2 (1-166)||(59360-59531)
chr2 (7-166)||(43445250-43445422)
chr2 (3-137)||(19093676-19093810)
chr2 (3-137)||(6177996-6178130)
chr2 (3-137)||(19073574-19073708)
chr2 (5-131)||(41644101-41644227)
chr2 (94-135)||(15651072-15651113)
chr2 (92-137)||(18947391-18947436)
chr2 (25-69)||(40912419-40912463)
chr2 (78-137)||(17244837-17244896)
chr2 (7-138)||(18514428-18514559)
[»] chr8 (3 HSPs)
chr8 (1-166)||(1872603-1872773)
chr8 (3-137)||(3038627-3038761)
chr8 (92-137)||(34685997-34686042)
[»] scaffold0312 (1 HSPs)
scaffold0312 (1-166)||(8231-8402)
[»] chr1 (9 HSPs)
chr1 (1-166)||(422170-422341)
chr1 (1-166)||(28012889-28013061)
chr1 (7-137)||(15964322-15964452)
chr1 (3-137)||(47554977-47555111)
chr1 (75-166)||(7842356-7842453)
chr1 (92-137)||(25943420-25943465)
chr1 (6-138)||(16135544-16135676)
chr1 (138-167)||(17695282-17695311)
chr1 (1-61)||(7843083-7843143)
[»] scaffold0001 (1 HSPs)
scaffold0001 (78-167)||(65956-66051)
[»] scaffold0262 (1 HSPs)
scaffold0262 (92-167)||(11454-11535)
[»] scaffold0200 (1 HSPs)
scaffold0200 (3-137)||(24510-24644)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 25470779 - 25470362
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||    
T  25470779 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgatggaccaccgtaacactaaattt 25470680  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaacttatgcatccaaaattcatgcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25470679 tactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaatttatgcatccaaaattcatgcata 25470580  T
Q  201 gtttgtttttcttcctccaaaattcatgcatggtttgctttctgtttatgcatccaaatggatccaaaatgcgatcttcaccatcgtccaaaattccaga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25470579 gtttgtttttcttcctccaaaattcatgcatggtttgctttctgtttatgcatccaaatggatccaaaatacgatcttcaccatcgtccaaaattccaga 25470480  T
Q  301 tttcttcctccaaaattccagatttcttcgtccaaaattcatccactatacgaccaacttatgcatcttcaccatcgcacagcttcatcaaatttccaga 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  25470479 tttcttcctccaaaattccagatttcttcgtccaaaattcatccactatacgaccaacttatacatcttcaccatcacacagcttcatcaaaattccaga 25470380  T
Q  401 tttcttcctccatctctg 418  Q
    ||||||||||||||||||    
T  25470379 tttcttcctccatctctg 25470362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 8759594 - 8759424
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| |||| |||||| |||| ||||| ||| ||||||||| ||||| ||| ||||||||| |||||| | |||| |     
T  8759594 aatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttttgatggaccactgtaagattaaa-ta 8759496  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||  ||| |||||||| |||||| |||||||||||||      |||||||||||||||||||||||||||||    
T  8759495 tatcttagtacaaatcggtcctcttacaaaatattaattacttttgatttattaacttattttatttaaaat 8759424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 10674951 - 10675085
Alignment:
Q  5 acttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtc--agcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    |||||||||||||| | ||||||||||  |||||| |||  |||| ||||||||||  | | |||||| |  |  |||| | || ||| |||||| ||||    
T  10674951 acttttttaaaaaaattattttgtttattcaatagtataactgttaatgccatgtctcaactagtgttctgcttgtggatcactctaagactaaacttta 10675050  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaa 137  Q
    ||||||||||||| ||||||| |||||||||||||    
T  10675051 ctttattacaaattagtcctcatacaaaatattaa 10675085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 23402064 - 23402198
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    |||||||||||||||||| |||||||||| ||||||| |||  ||   |||  |||||||| |||||  |  ||  ||||| || ||| |||||| ||||    
T  23402064 tgacttttttaaaaaagttattttgtttagccaatagtataactgccgatgttatgtcagctagtgtcatgttgggggaccactctaaaactaaacttta 23402163  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaa 137  Q
       ||||||||||||||| ||||||||||||||||    
T  23402164 tcctattacaaatcagtcatcgtacaaaatattaa 23402198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 22955079 - 22955138
Alignment:
Q  78 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| || ||| |||||| ||||| ||||||||||||||| ||| |||||||||||||    
T  22955079 tggaccactctaaaactaaactttaccttattacaaatcagttctcatacaaaatattaa 22955138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 49002505 - 49002446
Alignment:
Q  78 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| || ||| |||||| ||||| | ||||||||||||||||| |||||||||||||    
T  49002505 tggaccactctaaaactaaactttacctcattacaaatcagtcctcatacaaaatattaa 49002446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 5781782 - 5781740
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaatat 134  Q
    ||||| ||||||||||||||||||||||| || ||||||||||    
T  5781782 actaagttttactttattacaaatcagtcatcatacaaaatat 5781740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 40382156 - 40382111
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| ||||| ||||||||||||||||| | |||||||||||||    
T  40382156 actaaactttaccttattacaaatcagtccgcatacaaaatattaa 40382111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 8762886 - 8763303
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||    
T  8762886 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgatggaccaccgtaacactaaattt 8762985  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaacttatgcatccaaaattcatgcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8762986 tactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaatttatgcatccaaaattcatgcata 8763085  T
Q  201 gtttgtttttcttcctccaaaattcatgcatggtttgctttctgtttatgcatccaaatggatccaaaatgcgatcttcaccatcgtccaaaattccaga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8763086 gtttgtttttcttcctccaaaattcatgcatggtttgctttctgtttatgcatccaaatggatccaaaatacgatcttcaccatcgtccaaaattccaga 8763185  T
Q  301 tttcttcctccaaaattccagatttcttcgtccaaaattcatccactatacgaccaacttatgcatcttcaccatcgcacagcttcatcaaatttccaga 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  8763186 tttcttcctccaaaattccagatttcttcgtccaaaattcatccactatacgaccaacttatacatcttcaccatcacacagcttcatcaaaattccaga 8763285  T
Q  401 tttcttcctccatctctg 418  Q
    ||||||||||||||||||    
T  8763286 tttcttcctccatctctg 8763303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 13888465 - 13888291
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  13888465 aatgacttttttaaaaaagtcattttatttaaccaattgcatagttgtttatgccatgtcagctagtgtctttgtgatggacccctgtaacactaaattt 13888366  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 175  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13888365 tactttattataaatcagtcctcatacaaaatattaattgatttattaacttattttatttaaaatttctaaaaa 13888291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 3014793 - 3014634
Alignment:
Q  7 ttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttacttt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||||    
T  3014793 tttttttaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagttagtgtctttgtgatggaccactgtaacactaaattttacttt 3014694  T
Q  107 attacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 175  Q
    ||||||||||| ||||| |||         | |||||||||||||||||||||||||||||||| ||||    
T  3014693 attacaaatcaatcctcatac---------actgatttattaacttattttatttaaaatttctaaaaa 3014634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 26412188 - 26412017
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||| ||| ||||||||||||| |||| ||||||||||  ||||| ||| ||||||||| | | | |||||||||||||  ||||| ||||||||     
T  26412188 aatgacttatttgaaaaagtcattttatttagccaatagcatgattgttgatgtcatgtcagctaatatctttgtgatggaccattgtaagactaaatta 26412089  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||  ||||| |||||||||||||||| ||||||||||      |||||||||||||||||||||||||||||    
T  26412088 tatcttattgcaaatcagtcctcgtataaaatattaattacttttgatttattaacttattttatttaaaat 26412017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 25521634 - 25521533
Alignment:
Q  323 tttcttcgtccaaaattcatccactatacgaccaacttatgcatcttcaccatcgcaca------gcttcatcaaatttccagatttcttcctccatctc 416  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||      ||||||||||| ||||||||||||||||||| |||    
T  25521634 tttcttcctccaaaattcatccactgtacgaccaacttatgcatcttcaccatcgcacagattctgcttcatcaaaattccagatttcttcctccagctc 25521535  T
Q  417 tg 418  Q
    ||    
T  25521534 tg 25521533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 25654706 - 25654571
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||| |||||| |||||||||||||||||| ||| ||||| |||  |||||| | ||||| ||  ||||||||| || ||| |||||| ||    
T  25654706 aatgacttttttagaaaagttattttgtttaaccaatagtataattgttgatg-tatgtcaactagtgtattattgatggaccactctaaaactaaactt 25654608  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    ||| |||||||||||||||| | ||||||| ||||||    
T  25654607 taccttattacaaatcagtctttgtacaaactattaa 25654571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 12080426 - 12080582
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    |||||||||| ||||||| ||||||||||  | ||| |||| ||||| ||| ||||||||| |||||  |  || |||||| || ||| |||||| ||||    
T  12080426 tgacttttttgaaaaagttattttgtttagtcgataacataattgttgatgtcatgtcagctagtgtcctgctggtggaccactttaagactaaacttta 12080525  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatt 167  Q
    | ||||||||||||||||||| ||||||||        |||||||||||||||||||||||||||    
T  12080526 ccttattacaaatcagtcctcatacaaaat--------atttattaacttattttatttaaaatt 12080582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 25521676 - 25521615
Alignment:
Q  167 ttcttaaaacttatgcatccaaaattcatgcat-agtttgtttttcttcctccaaaattcat 227  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  25521676 ttcttaaaacttatgcatccaaaattcatgcataagttcgtttttcttcctccaaaattcat 25521615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 10053867 - 10053787
Alignment:
Q  92 actaaattttactttattacaaa--tcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaa 164  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||      |||||||||||||||||||||||||||    
T  10053867 actaaattttactttattacaaaaatcagtcctcatacaaaatattaattactcttgatttattaacttattttatttaaa 10053787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 29766508 - 29766628
Alignment:
Q  17 aagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaatc 116  Q
    |||| ||||| |||| ||||||| |||  |||| ||||||||||| | |||||| |  ||||||||| || ||| |||||| ||||| |||||||||||     
T  29766508 aagttattttatttatccaatagtataactgttaatgccatgtcaactagtgttctactgatggaccactctaagactaaactttaccttattacaaatt 29766607  T
Q  117 agtcctcgtacaaaatattaa 137  Q
    ||| ||| |||||||||||||    
T  29766608 agttctcatacaaaatattaa 29766628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 33848039 - 33848209
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    ||||| |||| ||||||| | ||||||||| |||||  ||| ||||| ||| ||||| ||| |||||  |  |||| |||  || ||| |||||| ||||    
T  33848039 tgactattttgaaaaagttactttgtttaatcaataatataattgttaatgacatgtaagctagtgtcatgctgatagactactctaagactaaacttta 33848138  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaatt 167  Q
    | |||||| |||||| ||||| |||||||||||||      ||||||||||||||| ||||||||||||||    
T  33848139 ccttattaaaaatcaatcctcatacaaaatattaattatttttgatttattaacttgttttatttaaaatt 33848209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 22616774 - 22616715
Alignment:
Q  78 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| || ||| |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  22616774 tggaccactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 22616715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 13381251 - 13381121
Alignment:
Q  9 ttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttat 108  Q
    ||||| |||| | ||||||||||  |||||| |||  |||| ||| ||||||||| |||||| |  || |||||| || |||  ||||| ||||| ||||    
T  13381251 ttttagaaaaattattttgtttagtcaatagtataactgttgatgtcatgtcagctagtgttctgctggtggacctctctaaggctaaactttaccttat 13381152  T
Q  109 tacaaatcagtcctcgtacaaaatattaatt 139  Q
    || |||||| ||||| |||||||||||||||    
T  13381151 tataaatcaatcctcatacaaaatattaatt 13381121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 33163796 - 33163737
Alignment:
Q  78 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| || ||| |||||| ||||| |||||||||||||||| || |||||||||||||    
T  33163796 tggaccactttaaaactaaactttaccttattacaaatcagtcttcatacaaaatattaa 33163737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 13887600 - 13887638
Alignment:
Q  274 atcttcaccatcgtccaaaattccagatttcttcctcca 312  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  13887600 atcttcaccatcgctcaaaattccagatttcttcctcca 13887638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 10237680 - 10237635
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| ||||| ||||||||||| |||| ||||||||||||||||    
T  10237680 actaaactttaccttattacaaattagtcatcgtacaaaatattaa 10237635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 41417360 - 41417401
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaata 133  Q
    |||||||||||| |||||||||||||||| || |||||||||    
T  41417360 actaaattttaccttattacaaatcagtcatcatacaaaata 41417401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 4487746 - 4487920
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  4487746 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaattt 4487845  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 175  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  4487846 tactttattacaaatcagtcctcatacaaaacattaattgatttattaacttattttatttaaaatttctaaaaa 4487920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 25441845 - 25441671
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||| ||||||||||||||||    
T  25441845 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgtcatgttagctagtgtctttgtgatggaccactgtaacactaaattt 25441746  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 175  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  25441745 tactttatcacaaatcagtcctcatacaaaatattaattgatttattaacttattttatttataatttctaaaaa 25441671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 18306571 - 18306709
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||  ||| ||||||||||||| ||||||| |||  |||| ||||||||||||| ||||| ||  ||||||||| |||| | |  ||||||    
T  18306571 aatgacttttttggaaatgtcattttgtttagccaatagaataaatgttgatgccatgtcagctagtgtcttgctgatggaccactgttagatcaaattt 18306670  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaatt 139  Q
    ||| ||||||||||||| |||||||||||||||||||||    
T  18306671 taccttattacaaatcaatcctcgtacaaaatattaatt 18306709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 48154377 - 48154551
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  48154377 aatgacttttttaaaaaaatcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaattt 48154476  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 175  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  48154477 tactttattacaaatcagtcctcatacaaaacattaattgatttattaacttattttatttaaaatttctaaaaa 48154551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 5125577 - 5125407
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||| ||||| ||||||||||| |||| ||||| ||||||||||||| ||||| ||||||||||||| |||||| |||||| |     
T  5125577 aatgacttttttgaaaaagttattttatttaaccaataacataattgttaatgccatgtcagctagtgtctttgtgatggaccactgtaagactaaa-ta 5125479  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||  ||||||||||||||||||| |||||||||||||      |||||||||||||||||||||||||||||    
T  5125478 tatcttattacaaatcagtcctcttacaaaatattaattacttttgatttattaacttattttatttaaaat 5125407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 29923055 - 29923226
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| |||||| ||||| |||||| || |||||||||||||    || ||||||||||||| || ||| |||||||||    
T  29923055 aatgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatggaccactataaaactaaattt 29923154  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||||||||||||||| ||| || ||||||||||||||      |||||||||||||||||||||||||||||    
T  29923155 tactttattacaaataagttcttgtacaaaatattaataacctttgatttattaacttattttatttaaaat 29923226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 29972208 - 29972379
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| |||||| ||||| |||||| || |||||||||||||    || ||||||||||||| || ||| |||||||||    
T  29972208 aatgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatggaccactataaaactaaattt 29972307  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||||||||||||||| ||| || ||||||||||||||      |||||||||||||||||||||||||||||    
T  29972308 tactttattacaaataagttcttgtacaaaatattaataacctttgatttattaacttattttatttaaaat 29972379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 42664012 - 42664180
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||  ||||||| ||||| ||||  |||||| ||||||||| ||| ||||||||| ||||| ||||||||  ||| |||||| |||||||||    
T  42664012 aatgactttttagaaaaagttattttatttagtcaatagtatagttgttgatgtcatgtcagctagtgtctttgtgataaaccactgtaagactaaattt 42664111  T
Q  101 tactttattacaaatcagtcctcgtacaaaa--tattaa---ttgatttattaacttattttatttaaa 164  Q
    |||||||||||||||||||||||||||||||  |||| |   |||||||||||||| ||| ||||||||    
T  42664112 tactttattacaaatcagtcctcgtacaaaaattatttacttttgatttattaactgattgtatttaaa 42664180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 11019835 - 11019665
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||| |||||| ||||||||||||| |||| ||||||||||  ||||| |||  |||| ||| ||||| ||||||||||||| || ||| |||||||||    
T  11019835 aatgatttttttgaaaaagtcattttatttagccaatagcatgattgtt-atgtaatgttagctagtgtctttgtgatggaccactctaagactaaattt 11019737  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||  |||||||||||||||||||||| ||||||||||      ||||||||||||||||||| |||||||||    
T  11019736 tatcttattacaaatcagtcctcgtataaaatattaattacttttgatttattaacttatttaatttaaaat 11019665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 54608003 - 54607839
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| |||| |||||| |||| ||||| |||||||||      |||| ||||||||||||| |||||| |||||| |     
T  54608003 aatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgccatgt------gtgtctttgtgatggaccactgtaagactaaa-ta 54607911  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||  |||||||||||||||| || |||||||||||||      |||||||||||||||||||||||||||||    
T  54607910 tatcttattacaaatcagtcttcttacaaaatattaattacttttgatttattaacttattttatttaaaat 54607839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 36689783 - 36689672
Alignment:
Q  28 tttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaatcagtcctcgtac 127  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||| ||  ||||||||| | |||| |||||| ||||||||||||||||| ||||||| |||    
T  36689783 tttaaccaataacatagttgttgatgtcatgtcagctagtgtcttgttgatggaccaccgtaaaactaaactttactttattacaaataagtcctcatac 36689684  T
Q  128 aaaatattaatt 139  Q
    ||||||||||||    
T  36689683 aaaatattaatt 36689672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 32180455 - 32180577
Alignment:
Q  15 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 114  Q
    |||||| |||||||||| ||||||| |||  || | ||| |||||| || |||||  |  || |||||| || ||| |||||| ||||| ||||||||||    
T  32180455 aaaagttattttgtttagccaatagtataactgctgatgtcatgtcggctagtgtcctgctggtggaccactctaaaactaaactttaccttattacaaa 32180554  T
Q  115 tcagtcctcgtacaaaatattaa 137  Q
    ||||||||| |||||||||||||    
T  32180555 tcagtcctcatacaaaatattaa 32180577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 19606681 - 19606740
Alignment:
Q  78 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| || ||| |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  19606681 tggaccactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 19606740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 26000816 - 26000754
Alignment:
Q  75 tgatggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||| |||| || ||| |||||| ||||||||||||||||||||| ||| |||||||||||||    
T  26000816 tgatagaccactctaaaactaaactttactttattacaaatcagtactcatacaaaatattaa 26000754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 38392320 - 38392454
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    ||||||||||| |||||| |||||||||| ||||||  |||  || | ||  ||| ||||| |||||  |  || || |||| | ||| |||||||||||    
T  38392320 tgacttttttagaaaagttattttgtttagccaataatataactgctgatatcatatcagctagtgtcatgttggtgaaccgttctaaaactaaatttta 38392419  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaa 137  Q
    | |||||||||||||||| || |||||||||||||    
T  38392420 cattattacaaatcagtcatcttacaaaatattaa 38392454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 40640412 - 40640457
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| |||| |||||||||||||||||||| |||||||||||||    
T  40640412 actaaactttattttattacaaatcagtcctcatacaaaatattaa 40640457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 13007168 - 13007206
Alignment:
Q  274 atcttcaccatcgtccaaaattccagatttcttcctcca 312  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  13007168 atcttcaccatcgctcaaaattccagatttcttcctcca 13007206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 43486249 - 43486220
Alignment:
Q  138 ttgatttattaacttattttatttaaaatt 167  Q
    ||||||||||||||||||||||||||||||    
T  43486249 ttgatttattaacttattttatttaaaatt 43486220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 45879269 - 45879310
Alignment:
Q  93 ctaaattttactttattacaaatcagtcctcgtacaaaatat 134  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||    
T  45879269 ctaaactttaccttattacaaatcagtcctcatacaaaatat 45879310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 49359409 - 49359454
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| ||||| |||||| |||||||||||| |||||||||||||    
T  49359409 actaaactttaccttattataaatcagtcctcatacaaaatattaa 49359454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 5914960 - 5915134
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  5914960 aatgacttttttaaaaaagtcattttgtttaaccaatagcaaagttgttcataccatgtcagctagtgtctttgtgatggaccactgtaacactaaattt 5915059  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 175  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5915060 tactttattacaaattagtcctcataaaaaatattaattgatttattaacttattttatttaaaatttctaaaaa 5915134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 14246550 - 14246379
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| |||| ||||||||||| || || |||||||||||||   ||| ||||||||||||| || ||| |||||||||    
T  14246550 aatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgatggaccactataagactaaattt 14246451  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||||||||||||||| |||||| | ||||||||||||      ||||||||| |||||||||||||||||||    
T  14246450 tactttattacaaataagtccttgaacaaaatattaattatttttgatttataaacttattttatttaaaat 14246379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 5813587 - 5813434
Alignment:
Q  15 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 114  Q
    ||||||||||||||||| ||||||||   ||| || ||||||||||||  ||||| ||| ||||||||| |||||| |||||| |||||||||||| |||    
T  5813587 aaaagtcattttgtttagccaatagc---gttcttgatgccatgtcagttagtgtctttatgatggaccactgtaagactaaa-tttactttattaaaaa 5813492  T
Q  115 tcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    | |||| | ||| ||||||||||      |||||||||||||||||||||||||||||    
T  5813491 taagtcattgtataaaatattaattacttttgatttattaacttattttatttaaaat 5813434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 2266561 - 2266682
Alignment:
Q  15 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 114  Q
    |||||| |||||||||| ||||||| |||  |||  ||||||||||||| |||||  |  || |||||| || ||| | |||| ||||| ||||||||||    
T  2266561 aaaagttattttgtttagccaatagtataactgtcgatgccatgtcagctagtgtcctgctggtggacccctctaaaa-taaactttacattattacaaa 2266659  T
Q  115 tcagtcctcgtacaaaatattaa 137  Q
    ||||||||| |||||||||||||    
T  2266660 tcagtcctcatacaaaatattaa 2266682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 17612686 - 17612559
Alignment:
Q  7 ttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttacttt 106  Q
    |||||| ||||||| ||||| |||| ||||||| |||  |||  ||| ||||||||| |||||  |  || |||||| || ||| |||||||||||| ||    
T  17612686 ttttttgaaaaagttattttatttagccaatagtataactgtcgatgtcatgtcagctagtgtcctgttggtggaccactctaaaactaaattttacctt 17612587  T
Q  107 attacaaatcagtcctcgtacaaaatat 134  Q
    ||||||||| ||||||| || |||||||    
T  17612586 attacaaattagtcctcatagaaaatat 17612559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22721941 - 22722023
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggacc 83  Q
    ||||||||||||  ||||||||||||||||| ||||| | |||  |||| ||||||||||||| ||||| ||  |||||||||    
T  22721941 aatgacttttttggaaaagtcattttgtttagccaatggaataaatgttgatgccatgtcagctagtgtcttgttgatggacc 22722023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 9743857 - 9743812
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||    
T  9743857 actaaattttacattattacaaaccagtcctcatacaaaatattaa 9743812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 54995027 - 54995068
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaata 133  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  54995027 actaacttttactttattacaaatcagtcctcatacaaaata 54995068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 2570830 - 2570700
Alignment:
Q  7 ttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttacttt 106  Q
    ||||||| |||||| ||| ||||||  |||||  ||| ||||  ||| ||||| ||| |||||| |  || |||||| || ||| |||||| ||||| ||    
T  2570830 ttttttagaaaagttattatgtttagacaataatataattgtcgatgtcatgttagctagtgttctgctggtggaccactctaaaactaaactttacctt 2570731  T
Q  107 attacaaatcagtcctcgtacaaaatattaa 137  Q
    ||||||||||| |||||  ||||||||||||    
T  2570730 attacaaatcattcctcaaacaaaatattaa 2570700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 22722061 - 22722089
Alignment:
Q  138 ttgatttattaacttattttatttaaaat 166  Q
    |||||||||||||||||||||||||||||    
T  22722061 ttgatttattaacttattttatttaaaat 22722089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37795188 - 37795140
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgtt 49  Q
    ||||||| |||| |||||||||||||||| | |||||| ||||||||||    
T  37795188 aatgactcttttgaaaaagtcattttgttcagccaatatcatagttgtt 37795140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 7565649 - 7565482
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  7565649 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaattt 7565550  T
Q  101 ta--ctttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaat 166  Q
    ||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7565549 tattttttattacaaatcagtcctcatacaaaatattaattgatttattaacttattttatttaaaat 7565482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 32652753 - 32652583
Alignment:
Q  5 acttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttact 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| || | ||| |||||||||||    
T  32652753 acttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatagaccactatgacattaaattttact 32652654  T
Q  105 ttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 175  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32652653 ttattacaaatcagtcctcatacaaaatattaattgatttattaacttattttatttaaaatttctaaaaa 32652583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 40912464 - 40912548
Alignment:
Q  85 ctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttc 169  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40912464 ctgtaacactaaattttactttattacaaatcagtcctcatacaaaatattaattgatttattaacttattttatttaaaatttc 40912548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 6357179 - 6357008
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||  |||| ||||||||||| || || |||||||||||||   ||| ||||||||||||| || ||| |||||||||    
T  6357179 aatgacttttttgaaaaagtcatttaatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgatggaccactataagactaaattt 6357080  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    |||||||||| |||| |||||| | ||||||||||||      ||||||||| |||||||||||||||||||    
T  6357079 tactttattataaataagtccttgaacaaaatattaattacttttgatttataaacttattttatttaaaat 6357008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 59531 - 59360
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||| ||||| |||| ||||| ||||| || || ||||||||||||| | ||  ||  |||||||||   |||| |||||||||    
T  59531 aatgacttttttgaaaaagttattttatttagccaattgcataattattgatgccatgtcagctaatggcttcttgatggaccaacgtaagactaaattt 59432  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||  |||||| ||||||||| ||||||||||||||||      |||||||||||||||||||||||||||||    
T  59431 tatcttattataaatcagtcatcgtacaaaatattaattacttttgatttattaacttattttatttaaaat 59360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 43445250 - 43445422
Alignment:
Q  7 ttttttaaaaaagtcattttgtttaaccaatagcatagttgttca-------tgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatt 99  Q
    ||||| |||||||||||||| |||| ||||||| ||||||||| |       ||||||||||   | |||||||  |||||||| | |||| ||||||||    
T  43445250 tttttaaaaaaagtcattttatttagccaatagaatagttgttaacttgttatgccatgtcaattaatgtttttcggatggaccaccgtaagactaaatt 43445349  T
Q  100 ttactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    |||||||||||||||| ||||||  |||||||||||||      |||||||||||||||||||||||||||||    
T  43445350 ttactttattacaaattagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 43445422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 19093810 - 19093676
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    |||||||||||||||||| | ||||||||| |||||| ||| ||||| |||  || ||| | ||||| ||  ||  ||||| || ||| |||||| ||||    
T  19093810 tgacttttttaaaaaagttaatttgtttaatcaatagtataattgttgatgttatctcaactagtgtcttgttggaggaccactctaaaactaaacttta 19093711  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaa 137  Q
    | ||||||||||||||||||| |||||||||||||    
T  19093710 ccttattacaaatcagtcctcttacaaaatattaa 19093676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 6178130 - 6177996
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    ||||||||||| |||||| |||||||||| ||||||| |||  ||   ||| ||||||||| |||||  |  || |||||| || ||  |||||| ||||    
T  6178130 tgacttttttagaaaagttattttgtttagccaatagtataactgccgatgtcatgtcagctagtgtcatgttggtggaccactctagaactaaacttta 6178031  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaa 137  Q
    | |||||||||||||||| ||||||||||||||||    
T  6178030 ccttattacaaatcagtcatcgtacaaaatattaa 6177996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 19073708 - 19073574
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    ||||||||||  |||||| ||||| ||||  |||||| ||| ||||| ||| ||||||||  |||||  |  || || ||| || ||| |||||||||||    
T  19073708 tgacttttttgtaaaagttattttatttagtcaatagtataattgttgatgtcatgtcagtcagtgtcctgctggtgaaccactttaaaactaaatttta 19073609  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaa 137  Q
    | |||||||||||||||||||||| ||||||||||    
T  19073608 ccttattacaaatcagtcctcgtataaaatattaa 19073574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 41644227 - 41644101
Alignment:
Q  5 acttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttact 104  Q
    |||||||| |||||   |||||||||| ||||||  ||| ||||| ||| ||||||||| |||||  |  || |||||| || ||| |||||| | |||     
T  41644227 acttttttgaaaaatatattttgtttagccaataatataattgttgatgtcatgtcagctagtgtcatgctggtggaccactctaaaactaaactctacc 41644128  T
Q  105 ttattacaaatcagtcctcgtacaaaa 131  Q
    ||||||||||||||||||| |||||||    
T  41644127 ttattacaaatcagtcctcatacaaaa 41644101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 15651113 - 15651072
Alignment:
Q  94 taaattttactttattacaaatcagtcctcgtacaaaatatt 135  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  15651113 taaactttactttattacaaatcagtcctcatacaaaatatt 15651072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 18947391 - 18947436
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  18947391 actaaactttaccttattacaaatcagtcctcatacaaaatattaa 18947436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 40912419 - 40912463
Alignment:
Q  25 ttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgt 69  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||    
T  40912419 ttgtttaaccgatagaatagttgttcatgccatgtcagctagtgt 40912463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 17244837 - 17244896
Alignment:
Q  78 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| || ||| |||||| ||||| ||||||||||||| ||||| |||||||||||||    
T  17244837 tggaccactctaaaactaaactttaccttattacaaatcactcctcatacaaaatattaa 17244896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 18514428 - 18514559
Alignment:
Q  7 ttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttacttt 106  Q
    |||||| ||||||| |||||||||| | ||||| |||  |||| ||| ||||||| | |||||  |  || |||||| || ||| ||| || ||||||||    
T  18514428 ttttttgaaaaagttattttgtttagctaatagtataactgttaatgtcatgtcaactagtgtcgtgctggtggaccactataagactgaactttacttt 18514527  T
Q  107 attacaaatcagtcctcgtacaaaatattaat 138  Q
    |||| |||||| || || ||||||||||||||    
T  18514528 attataaatcaatcatcatacaaaatattaat 18514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 1872603 - 1872773
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| |||||||||||||||| | ||| || |||||||||| ||||||||||||| | ||| ||||||||||| |  ||||| || ||||||    
T  1872603 aatgacttttttgaaaaagtcattttgttcagccattaacatagttgttgatgccatgtcagctaatgtctttgtgatgga-cattgtaaaaccaaattt 1872701  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    |||||||||| |||||||||||  |||||||||||||      |||||||||||||||||||||||||||||    
T  1872702 tactttattataaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 1872773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 3038761 - 3038627
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    |||||||||||||||| | |||||||||| ||||||| | | ||| | ||| ||||||| | ||||| ||  || |||||| || ||| |||||| ||||    
T  3038761 tgacttttttaaaaaaattattttgtttagccaatagtagaattgctgatgtcatgtcaacaagtgtcttgctggtggaccactctaaaactaaacttta 3038662  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaa 137  Q
    | ||||||||||||| || || |||||||||||||    
T  3038661 ccttattacaaatcaatcatcatacaaaatattaa 3038627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 34686042 - 34685997
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||    
T  34686042 actaaactttactttattacaaatcagtcctcatacaaaatattaa 34685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 8231 - 8402
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||| ||| ||  ||||||||| | ||| ||  ||||||||| || ||  |||||| ||    
T  8231 aatgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttgatggaccactctacgactaaactt 8330  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||||||||||||| | ||||||| |||||||||||||      |||||||||||||||||||||||||||||    
T  8331 tactttattacaacttagtcctcatacaaaatattaattacttttgatttattaacttattttatttaaaat 8402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 422341 - 422170
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||| ||| ||  ||||||||| | ||| ||  ||||||||| || ||  |||||| ||    
T  422341 aatgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttgatggaccactctacgactaaactt 422242  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 166  Q
    ||||||||||||| | ||||||| |||||||||||||      |||||||||||||||||||||||||||||    
T  422241 tactttattacaacttagtcctcatacaaaatattaattacttttgatttattaacttattttatttaaaat 422170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 28013061 - 28012889
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattt 100  Q
    |||| ||||||| ||||||| |||||| ||| ||||||||||| ||||| ||| ||||||||| ||||| ||  |||| ||||   | || | |||| ||    
T  28013061 aatgtcttttttgaaaaagttattttggttagccaatagcataattgttgatgtcatgtcagctagtgtcttgctgatagaccatcgcaagagtaaactt 28012962  T
Q  101 tactttattacaaatcagtcctcgtacaaaatattaa-------ttgatttattaacttattttatttaaaat 166  Q
    ||| |||||||||||||||||||||| ||| ||||||       |||||||||||||||||||||||||||||    
T  28012961 taccttattacaaatcagtcctcgtaaaaactattaattactttttgatttattaacttattttatttaaaat 28012889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 15964452 - 15964322
Alignment:
Q  7 ttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttacttt 106  Q
    ||||||| |||| | |||||||||| ||||||| |||  |||  ||| ||||||||| |||||  |  | ||| ||| || ||| |||||||||||| ||    
T  15964452 ttttttagaaaaattattttgtttagccaatagtataactgtcgatgtcatgtcagctagtgtcctactaatgtaccactctaaaactaaattttacctt 15964353  T
Q  107 attacaaatcagtcctcgtacaaaatattaa 137  Q
    ||||||||||||||||| || ||||||||||    
T  15964352 attacaaatcagtcctcatataaaatattaa 15964322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 47555111 - 47554977
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    |||||||||| ||||||| |||||||||||||||||| |||  |||| | ||||||||| | |||||  |  |  | |||| || ||| | |||| ||||    
T  47555111 tgacttttttgaaaaagttattttgtttaaccaatagtataactgttgaggccatgtcaactagtgtcctgctagtagaccactctaagagtaaacttta 47555012  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaa 137  Q
    | |||||||||||||||| || |||||||||||||    
T  47555011 ccttattacaaatcagtcatcatacaaaatattaa 47554977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 7842453 - 7842356
Alignment:
Q  75 tgatggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaatt------gatttattaacttattttatttaaaat 166  Q
    |||| |||| |||||| | |||| ||||  ||||||||||||| |||||||| |||||||| |||      |||||||||||||||||||||||||||    
T  7842453 tgatagaccactgtaagaataaactttatcttattacaaatcaatcctcgtaaaaaatatttattacttttgatttattaacttattttatttaaaat 7842356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 25943465 - 25943420
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 137  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||    
T  25943465 actaaattttatcttattacaaatcagtcatcgtacaaaatattaa 25943420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 16135676 - 16135544
Alignment:
Q  6 cttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactt 105  Q
    ||||||| ||||||| |||||||||| | ||||| |||  |||  ||| ||||||| | |||||  |  || |||||| || ||| |||||| |||||      
T  16135676 cttttttgaaaaagttattttgtttagctaatagtataactgtcgatgtcatgtcaactagtgtcatactggtggaccactctaaaactaaactttaccc 16135577  T
Q  106 tattacaaatcagtcctcgtacaaaatattaat 138  Q
    |||||||||||||| ||| ||||||||||||||    
T  16135576 tattacaaatcagttctcatacaaaatattaat 16135544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 17695282 - 17695311
Alignment:
Q  138 ttgatttattaacttattttatttaaaatt 167  Q
    ||||||||||||||||||||||||||||||    
T  17695282 ttgatttattaacttattttatttaaaatt 17695311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7843143 - 7843083
Alignment:
Q  1 aatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtca 61  Q
    |||||||||||| ||||||| |||||| ||  ||||||||||| ||||| |||| ||||||    
T  7843143 aatgactttttttaaaaagttattttggttggccaatagcataattgttgatgcaatgtca 7843083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 66051 - 65956
Alignment:
Q  78 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaatt 167  Q
    |||||| || |||||||||| ||||| |||||| |||| ||||||| |||||||||||||      ||||||||||||||||| ||||||| ||||    
T  66051 tggaccactttaacactaaactttaccttattataaattagtcctcatacaaaatattaattacttttgatttattaacttatattatttataatt 65956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 11454 - 11535
Alignment:
Q  92 actaaattttactttattacaaatcagtcctcgtacaaaatattaat------tgatttattaacttattttatttaaaatt 167  Q
    |||||||||||  ||||||||||||||||||| ||||||||| ||||      | ||||||||||||||||| |||||||||    
T  11454 actaaattttatcttattacaaatcagtcctcatacaaaataataattacttataatttattaacttattttgtttaaaatt 11535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 24510 - 24644
Alignment:
Q  3 tgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta 102  Q
    ||||||||||| |||||| |||||||| | ||||||| |||  ||   ||| ||||||||| |||||  |  || |||| | || ||  |||||| ||||    
T  24510 tgacttttttagaaaagttattttgttaagccaatagtataactgccgatgtcatgtcagctagtgtcatgttggtggatcactctagaactaaacttta 24609  T
Q  103 ctttattacaaatcagtcctcgtacaaaatattaa 137  Q
    | |||||||||||||||| ||||||||||||||||    
T  24610 ccttattacaaatcagtcatcgtacaaaatattaa 24644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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