View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19274_low_4 (Length: 355)
Name: NF19274_low_4
Description: NF19274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19274_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 7289239 - 7289575
Alignment:
| Q |
1 |
catgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttggacttcaacaaatccttagaaatgaagaaaaatagaaaacttatacaaattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7289239 |
catgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttagacttcaacaaatccttagaaatgaaaaaaaatagaaaacttatacaaattaa |
7289338 |
T |
|
| Q |
101 |
accaacaccaacaccatcaataaaagcaaaatcatgaagtttctaaaaggaacactttctctatctgaacgtgaaggaggaataacatcatcaaagaaca |
200 |
Q |
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| T |
7289339 |
accaacaccaacaccatcaataaaagcaaaatcatgaagtttctaaaaagaacactttctctatctgaacgtgaaggaggaataacatcatcaaagaaca |
7289438 |
T |
|
| Q |
201 |
atggttatgtcctaaaagggtattcagctgtttatattggagaagaacttaagaggttcatcataccaccaactgaatatttgggtcatcaagcttttca |
300 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7289439 |
atggttatgtcctaaaagggtatttagctgtttgtattggagaagaacttaagaggttcatcataccaccaactgaatatttgtgtcatcaagcttttca |
7289538 |
T |
|
| Q |
301 |
gattcttttgagagaagctgaagaagaatttgggttt |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7289539 |
gattcttttgagagaagctgaagaagaatttgggttt |
7289575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 1197343 - 1197007
Alignment:
| Q |
1 |
catgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttggacttcaacaaatcctta-gaaatgaagaaaaatagaaaacttat-acaaatt |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||| |||||||||| ||||| || | ||| |
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| T |
1197343 |
catgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaactcatcaaaaacc |
1197244 |
T |
|
| Q |
99 |
aaa-ccaacaccaacaccatcaataaaagcaaaatcatgaagtttctaaaaggaacactttctctatctgaacgtgaaggaggaataacatcatcaaaga |
197 |
Q |
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| T |
1197243 |
acagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaacatcatcaaaca |
1197144 |
T |
|
| Q |
198 |
acaatggttatgtcctaaaagggtattcagctgtttatattggagaagaacttaagaggttcatcataccaccaactgaatatttgggtcatcaagcttt |
297 |
Q |
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||||||||| ||| | |||||| |||| |||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1197143 |
acaatggttctgttccaaaaggatatttagctgtttgtgttggagaagagcttaagaggttcatcat---accaactgaatatttgggtcatcaagcttt |
1197047 |
T |
|
| Q |
298 |
tcagattcttttgagagaagctgaagaagaatttgggttt |
337 |
Q |
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|
| T |
1197046 |
tcagattcttttgagagaagctgaagaagaatttgggttt |
1197007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 50470930 - 50470979
Alignment:
| Q |
16 |
aaagaaatctaacaaaattagagaaatcgttggacttcaacaaatcctta |
65 |
Q |
| |
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||||||| |||||||||| |||||||||||| |||||||||| ||||||| |
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|
| T |
50470930 |
aaagaaacctaacaaaatcagagaaatcgttagacttcaacagatcctta |
50470979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 50471179 - 50471248
Alignment:
| Q |
268 |
accaactgaatatttgggtcatcaagcttttcagattcttttgagagaagctgaagaagaatttgggttt |
337 |
Q |
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|||||| || ||||||| ||||||||| ||||| || | | ||||||||||||||||||||||||||| |
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| T |
50471179 |
accaaccgagtatttggctcatcaagcctttcatatattactcagagaagctgaagaagaatttgggttt |
50471248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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