View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19274_low_6 (Length: 297)
Name: NF19274_low_6
Description: NF19274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19274_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 48250052 - 48250284
Alignment:
| Q |
5 |
aaattacaatgtcaaacttccagagccataatatagattacggaaagaaaaatcatacaaattccnnnnnnnngacaaatttcggagccataatgaattc |
104 |
Q |
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| T |
48250052 |
aaattacaatgtcaaacttccagagccataatgtaggtcacggaaagaaaaatcatacaaatt------------------tcggagccataatgaattc |
48250133 |
T |
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| Q |
105 |
ttataaacttaaaagcccttaagagagtcgaaactagtatatcctaaaaatgctacatatatatttttatgtaaaatatatgtggtggtataataaaccc |
204 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48250134 |
ttataaacttaaa-gcccttaagagagtcgaaactagtatatcctaaaaatgctccatatatatttttatgtaaaatatatgtggtggtaaaataaaccc |
48250232 |
T |
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| Q |
205 |
taataagattaattggattgggtcaagtctttctcccattaaataatcaaaa |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48250233 |
taataagattaattggattgggtcaagtctttctcccattaaataaccaaaa |
48250284 |
T |
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