View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19274_low_8 (Length: 286)
Name: NF19274_low_8
Description: NF19274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19274_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 54810933 - 54811215
Alignment:
| Q |
4 |
ataattgagtgccactaattcaacaacaaatttccaagaattttaattgtatttccaaatttgaatttgacacgaggcaactttttaaaataaatagact |
103 |
Q |
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| T |
54810933 |
ataattgagtgccactaattgaacaacaaatttccaagaattttaatggtatttccaaatttgaatttgacacgatgcaactttttaaaagaaatagact |
54811032 |
T |
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| Q |
104 |
gcataaattttctttagtt----------------attgattataaatttacgtttaaggtgaataaatcagaaatttggagttcgaaccttgactccct |
187 |
Q |
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| T |
54811033 |
gcataaattttctttagttttttttttttttttttattgtttataaattt-cgtttaaggtgaataaatcagaaatttagagttcgaacgttgactccct |
54811131 |
T |
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| Q |
188 |
ttctacttgaatttctctatcaactaaactaagttcacaaagatttcttgagttaatattttttatgcaaaatatatatatttt |
271 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54811132 |
ttctacttgaatatctctatcaactaaactaaattcacaaagatttcttgagttaatattttttatgcaaaatatatatttttt |
54811215 |
T |
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