View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19275_low_6 (Length: 361)
Name: NF19275_low_6
Description: NF19275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19275_low_6 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 177 - 361
Target Start/End: Original strand, 35343561 - 35343745
Alignment:
| Q |
177 |
gaatgatatgtcattataaatattaacaaggtttcaccattcatatcgcaaattgacatgacttaattgcaaaggaacataccttatttaggacagcaaa |
276 |
Q |
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| T |
35343561 |
gaatgatatgtcattataaatattaacaaggtttcaccattcatatcgcaaattgacatgacttaattgcaaaggaacataccttatttaggacagcaaa |
35343660 |
T |
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| Q |
277 |
agcagcctggacgggagtcatatcctcgaatggcatcctgccggtgagcatctcccataacataagcccaaaactatagacatca |
361 |
Q |
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| T |
35343661 |
agcagcctggacgggagtcatatcctcgaatggtattctaccggtaagcatctcccataacataagcccaaaactatagacatca |
35343745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 177 - 361
Target Start/End: Complemental strand, 35362395 - 35362211
Alignment:
| Q |
177 |
gaatgatatgtcattataaatattaacaaggtttcaccattcatatcgcaaattgacatgacttaattgcaaaggaacataccttatttaggacagcaaa |
276 |
Q |
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| T |
35362395 |
gaatgatatgtcattataaatattaacaaggtttcaccattcatatcgcaaattgacatgacttaattgcaaaggaacataccttatttaggacagcaaa |
35362296 |
T |
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| Q |
277 |
agcagcctggacgggagtcatatcctcgaatggcatcctgccggtgagcatctcccataacataagcccaaaactatagacatca |
361 |
Q |
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| T |
35362295 |
agcagcctggacgggagtcatatcctcgaatggtattctaccggtaagcatctcccataacataagcccaaaactatagacatca |
35362211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 35343358 - 35343528
Alignment:
| Q |
14 |
ttctaacaccttaacaacctgccagaactcaggccttttgtccggattcaaggaccaacattgctccattaaagctcgcatagctggtgggcagtttgaa |
113 |
Q |
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| T |
35343358 |
ttctaacaccttaacaacctgccagaactcaggccttttgtccggattcaaggaccaacattgctccattaaagctcgcatagctggtgggcagtttgaa |
35343457 |
T |
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| Q |
114 |
ggaataacaggccttgaattctgaaaa-----aatacacaaatctttgtaattgtcatataattaagtgaa |
179 |
Q |
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| T |
35343458 |
ggaataacaggccttgaattctgaaaagaaaaaaaacacaaatctttgtaattgtcatataattaagtgaa |
35343528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 35362598 - 35362428
Alignment:
| Q |
14 |
ttctaacaccttaacaacctgccagaactcaggccttttgtccggattcaaggaccaacattgctccattaaagctcgcatagctggtgggcagtttgaa |
113 |
Q |
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| T |
35362598 |
ttctaacaccttaacaacctgccagaactcaggccttttgtccggattcaaggaccaacattgctccattaaagctcgcatagctggtgggcagtttgaa |
35362499 |
T |
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| Q |
114 |
ggaataacaggccttgaattctgaaaa-----aatacacaaatctttgtaattgtcatataattaagtgaa |
179 |
Q |
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| T |
35362498 |
ggaataacaggccttgaattctgaaaagaaaaaaaacacaaatctttgtaattgtcatataattaagtgaa |
35362428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 190 - 361
Target Start/End: Complemental strand, 35355734 - 35355563
Alignment:
| Q |
190 |
ttataaatattaacaaggtttcaccattcatatcgcaaattgacatgacttaattgcaaaggaacataccttatttaggacagcaaaagcagcctggacg |
289 |
Q |
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|||||||||||||| ||||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |
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| T |
35355734 |
ttataaatattaacgaggtttcactattcatatggaaaattcacatgacttaattgcaaaggaacataccttatttacgacagcaaacgcagcctggatg |
35355635 |
T |
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| Q |
290 |
ggagtcatatcctcgaatggcatcctgccggtgagcatctcccataacataagcccaaaactatagacatca |
361 |
Q |
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| T |
35355634 |
ggagtcatatcctcatatggtattgtaccggtgagcatttcccataagataagcccaaaactatagacatca |
35355563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 35356552 - 35356432
Alignment:
| Q |
18 |
aacaccttaacaacctgccagaactcaggccttttgtccggattcaaggaccaacattgctccattaaagctcgcatagctggtgggcagtttgaaggaa |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
35356552 |
aacaccttaacaacctgccagaaatcaggccttttgtccggattcaaggaccaacattgctcaattaaagctcgcattgctggtgggcagtttgaaggaa |
35356453 |
T |
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| Q |
118 |
taacaggccttgaattctgaa |
138 |
Q |
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| | |||||| |||||||||| |
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| T |
35356452 |
tgataggcctcgaattctgaa |
35356432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 3821751 - 3821638
Alignment:
| Q |
33 |
tgccagaactcaggccttttgtccggattcaaggaccaacattgctccattaaagctcgcatagctggtgggcagtttgaaggaataacaggccttgaat |
132 |
Q |
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|||||||| |||||||| || ||||| | ||| |||||||||||||| || ||||||||||| || ||||||||||||||||||||||| |||||| | | |
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| T |
3821751 |
tgccagaaatcaggcctcttatccggttgcaacgaccaacattgctcgatcaaagctcgcattgcaggtgggcagtttgaaggaataactggccttaatt |
3821652 |
T |
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| Q |
133 |
tctgaaaaaataca |
146 |
Q |
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|||||| ||||||| |
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| T |
3821651 |
tctgaagaaataca |
3821638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 351
Target Start/End: Complemental strand, 3820445 - 3820340
Alignment:
| Q |
246 |
caaaggaacataccttatttaggacagcaaaagcagcctggacgggagtcatatcctcgaatggcatcctgccggtgagcatctcccataacataagccc |
345 |
Q |
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||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||| | || || | ||||| | ||| |||||||| |||||||| |
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| T |
3820445 |
caaaggaacataccttattcacaacagcaaaagcagcctggattggattcatatcctcgtagggaattgttccggtcaacatttcccataagataagccc |
3820346 |
T |
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| Q |
346 |
aaaact |
351 |
Q |
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|||||| |
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| T |
3820345 |
aaaact |
3820340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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