View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19276_high_5 (Length: 244)
Name: NF19276_high_5
Description: NF19276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19276_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 20707507 - 20707284
Alignment:
| Q |
1 |
tcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20707507 |
tcttgaaaccgtcttggatgtttctctccaccagacaaaagatattcttctatacatatttaatatgaaccccaattcgaataagctcttcgtattttat |
20707408 |
T |
|
| Q |
101 |
caacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcc |
200 |
Q |
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||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20707407 |
-aacatgatttagtggatatgtccatatttgggaacgctttccaggatcacgttttaaagtattcacaaaataagcttggttatgcacttcttcaattcc |
20707309 |
T |
|
| Q |
201 |
tagaacttgaacaagttgatgtgta |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
20707308 |
tagaacttgaacaagttgatgtgta |
20707284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 20875551 - 20875328
Alignment:
| Q |
1 |
tcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20875551 |
tcttgaaaccgtcttggatgtttctctccaccagacaaaagatattcttctatacatatttaatatgaaccccaattcgaataagctcttcgtattttat |
20875452 |
T |
|
| Q |
101 |
caacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcc |
200 |
Q |
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||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20875451 |
-aacatgatttagtggatatgtccatatttgggaacgctttccaggatcacgttttaaagtattcacaaaataagcttggttatgcacttcttcaattcc |
20875353 |
T |
|
| Q |
201 |
tagaacttgaacaagttgatgtgta |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
20875352 |
tagaacttgaacaagttgatgtgta |
20875328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 41594684 - 41594486
Alignment:
| Q |
1 |
tcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttat |
100 |
Q |
| |
|
|||| ||||||||||||||| | || ||||||||||||||||||||||| || | || ||||| ||||||||||| ||||||||||||||||| || |
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|
| T |
41594684 |
tctttaaaccgtcttggatgatctcctgtaccagacaaaggatattcttctaaatggatttgatatggaccccaattcagataagctcttcgtatttcat |
41594585 |
T |
|
| Q |
101 |
caacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattc |
199 |
Q |
| |
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| || ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| | | |||||||| ||||||||||| |
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| T |
41594584 |
ccacatgatttgctggaaatgtccatattggggaacgctttccaggatcacgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattc |
41594486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 43523291 - 43523093
Alignment:
| Q |
1 |
tcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttat |
100 |
Q |
| |
|
|||| ||||||||||||||| | || ||||||||||||||||||||||| || | || ||||| ||||||||||||||||||||||||||||| || |
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| T |
43523291 |
tctttaaaccgtcttggatgatctcctgtaccagacaaaggatattcttctaaatggatttgatatggaccccaattcaaataagctcttcgtatttcat |
43523192 |
T |
|
| Q |
101 |
caacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattc |
199 |
Q |
| |
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| || ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| | | |||||||| ||||||||||| |
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| T |
43523191 |
ccacatgatttgctggaaatgtccatattggggaacgctttccaggatcacgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattc |
43523093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 22511748 - 22511946
Alignment:
| Q |
1 |
tcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttat |
100 |
Q |
| |
|
|||| ||||||||||||||| | | || |||||||||| |||||||||||| || | || |||| ||||||||| | ||||||||||| ||||| || |
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| T |
22511748 |
tctttaaaccgtcttggatgatcccctttaccagacaaatgatattcttctaaatggatttgatatagaccccaatttagataagctcttcatatttcat |
22511847 |
T |
|
| Q |
101 |
caacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattc |
199 |
Q |
| |
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| || ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| | | |||||||| ||||||||||| |
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| T |
22511848 |
ccacatgatttgctggaaatgtccatattggggaacgctttccaggatcacgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattc |
22511946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 23123160 - 23123357
Alignment:
| Q |
1 |
tcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttat |
100 |
Q |
| |
|
|||| ||||||||||||||| | | || ||||||| ||||||||||||||| || | || ||||| ||||||||||| ||||||||||||||||| || |
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| T |
23123160 |
tctttaaaccgtcttggatgatcccctttaccagacgaaggatattcttctaaatggatttgatatggaccccaattcagataagctcttcgtatttcat |
23123259 |
T |
|
| Q |
101 |
caacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaatt |
198 |
Q |
| |
|
| || ||||||| |||| ||||||||||| ||||||||||| || |||||||||||||| ||||| ||||| | | |||||||| |||||||||| |
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|
| T |
23123260 |
ccacatgatttgctggaaatgtccatattggggaacgcttttcaagatcacgttctaaataattcaaaaaatcacccgcgttatgcaattcttcaatt |
23123357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 14007483 - 14007347
Alignment:
| Q |
63 |
atatgaaccccaattcaaataagctcttcgtattttatcaacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagta |
162 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| ||| || ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
14007483 |
atatggaccccaatttagataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgctttccaggatcacgttctaaagaa |
14007384 |
T |
|
| Q |
163 |
ttcacaaaataagcttggttatgcacttcttcaattc |
199 |
Q |
| |
|
|||| ||||| | | |||||||| ||||||||||| |
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|
| T |
14007383 |
ttcaaaaaatcacccgcgttatgcaattcttcaattc |
14007347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 12869189 - 12869289
Alignment:
| Q |
99 |
atcaacttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaatt |
198 |
Q |
| |
|
|||||| ||||||| |||| |||||| |||| |||||||||||||||||||||||||||||| ||||| ||||| | | |||||||| |||||||||| |
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|
| T |
12869189 |
atcaacatgatttgctggaaatgtccgtattggggaacgctttccaggatcacgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaatt |
12869288 |
T |
|
| Q |
199 |
c |
199 |
Q |
| |
|
| |
|
|
| T |
12869289 |
c |
12869289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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