View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19276_low_1 (Length: 825)
Name: NF19276_low_1
Description: NF19276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19276_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 502 - 698
Target Start/End: Original strand, 33525886 - 33526082
Alignment:
| Q |
502 |
tcattgatggaggaagataataacaataacaaagagaatttggtagtgatgagatatcactctgattattatggtatttcaactgacattgctagagaga |
601 |
Q |
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| T |
33525886 |
tcattgatggaggaagataataacaataacaaagagaatttggtagtgatgagatatcactctgattattatggtatttcaactgatattgctagagaga |
33525985 |
T |
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| Q |
602 |
catggattgttggtggtttaacagatccaatgtcgaggagtcgaagttggaaaagatgaattaatctgatcattttccaatattaattactcttata |
698 |
Q |
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| T |
33525986 |
catggattgttggtggtttaacagatccaatgtcgaggagtcgaagttggaaaagatgaattaatctgatcattttccaatattaattactcttata |
33526082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 33525542 - 33525631
Alignment:
| Q |
158 |
tgtattataacgatcatgttggtgtagaagagactcatcgtgacagcgaatcatcaagagctgtgttctcaaaatggttcatggttatgc |
247 |
Q |
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| T |
33525542 |
tgtattataacgatcatgttggtgtagaagagactcatcgcgacagcgaatcatcaagagctgtgttctcaaaatggttcatggtgatgc |
33525631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 300 - 370
Target Start/End: Original strand, 33525684 - 33525754
Alignment:
| Q |
300 |
ctgtggtgatggagaaatctctgtgcctcctccaaatgcattattgctcatgcgatgtaggtctgctccgg |
370 |
Q |
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| T |
33525684 |
ctgtggtgatggagaaatctctgtgcctcctccaaatgcattattgctcatgcgatgtaggtctgctccgg |
33525754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 761 - 809
Target Start/End: Original strand, 33526145 - 33526193
Alignment:
| Q |
761 |
gctaactgggaaattcaacattaaatttccaggtttagaatcttttatg |
809 |
Q |
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| T |
33526145 |
gctaactgggaaattcaacattaaattcccaggtttagaatcttttatg |
33526193 |
T |
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