View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19276_low_3 (Length: 412)
Name: NF19276_low_3
Description: NF19276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19276_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 19300710 - 19300554
Alignment:
| Q |
19 |
ctagcaagaaaacaaaaaatggttataacaatgaagtgtatgagagtttgaagattgatagagaaagttattctgaagattcagcttatgagagtgatga |
118 |
Q |
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| T |
19300710 |
ctagcaagaaaacaaaaaatggttataacaatgaagtgtatgagagtttgaagattgatagagaaagttattctgaagattcagcttatgagagtgatga |
19300611 |
T |
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| Q |
119 |
aaacagctcagaaagtgattcttatcctgcaccaaaggcacaaagcaataagaacat |
175 |
Q |
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| T |
19300610 |
aaacagctcagaaagtgattcttatcctgctccaaaggcacaaagcaataagaacat |
19300554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 246 - 388
Target Start/End: Complemental strand, 19300483 - 19300341
Alignment:
| Q |
246 |
catgaatgtccaatttgtaacaagattttcaagtcaggacaagctttagggggtcacaaaaggtcccattttattggaggaaatgatgataacactcttg |
345 |
Q |
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| T |
19300483 |
catgaatgtccaatttgcaacaagattttcaagtcaggacaagctttagggggtcacaaaagatcccattttattggaggaaatgatgataacactcttg |
19300384 |
T |
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| Q |
346 |
tgattagaccagctgctgctgctcatgttcatgctgctcctgc |
388 |
Q |
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| T |
19300383 |
tgattagaccagctgctgctgctcatgctcatgctgctcctgc |
19300341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 19300344 - 19300308
Alignment:
| Q |
361 |
ctgctgctcatgttcatgctgctcctgcacctcctgc |
397 |
Q |
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| T |
19300344 |
ctgctgctcatgctcatgctgctcctgcacctcctgc |
19300308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 368
Target Start/End: Complemental strand, 32265955 - 32265834
Alignment:
| Q |
247 |
atgaatgtccaatttgtaacaagattttcaagtcaggacaagctttagggggtcacaaaaggtcccattttattggaggaaatgatgataacactcttgt |
346 |
Q |
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|||||||||||||||| |||| ||||||| |||||||||||| ||||| || || ||||| || |||||| |||||||| ||| || |||||| |||| |
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| T |
32265955 |
atgaatgtccaatttgctacaaaattttcaggtcaggacaagcattaggaggacataaaagatcacattttgttggaggatctgaagagaacacttttgt |
32265856 |
T |
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| Q |
347 |
gattagaccagctgctgctgct |
368 |
Q |
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| T |
32265855 |
gatcaaacaagctgctgctgct |
32265834 |
T |
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