View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19276_low_4 (Length: 292)

Name: NF19276_low_4
Description: NF19276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19276_low_4
NF19276_low_4
[»] chr7 (5 HSPs)
chr7 (12-276)||(20707527-20707792)
chr7 (12-276)||(20875571-20875836)
chr7 (58-228)||(41595380-41595550)
chr7 (117-228)||(31420677-31420788)
chr7 (14-42)||(41594706-41594734)
[»] chr5 (5 HSPs)
chr5 (58-228)||(23122289-23122459)
chr5 (58-228)||(14008231-14008401)
chr5 (117-228)||(22271618-22271729)
chr5 (14-42)||(14007557-14007585)
chr5 (14-42)||(23123110-23123138)
[»] chr2 (3 HSPs)
chr2 (58-228)||(43523986-43524156)
chr2 (117-228)||(5087406-5087517)
chr2 (14-42)||(43523313-43523341)
[»] chr3 (4 HSPs)
chr3 (58-224)||(22510896-22511062)
chr3 (117-228)||(2735308-2735419)
chr3 (117-228)||(40924354-40924465)
chr3 (84-228)||(22127789-22127933)
[»] chr4 (2 HSPs)
chr4 (58-228)||(50413725-50413895)
chr4 (117-209)||(14798457-14798549)
[»] chr6 (1 HSPs)
chr6 (117-228)||(95980-96091)
[»] scaffold0005 (1 HSPs)
scaffold0005 (117-209)||(41179-41271)
[»] chr1 (1 HSPs)
chr1 (117-196)||(27132127-27132206)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 20707527 - 20707792
Alignment:
Q  12 ctttcatggctagaatattcaccttcaaagggtgctgcannnnnnnatatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatg 111  Q
    ||||||||||||||||||| |||||||| || |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20707527 ctttcatggctagaatatttaccttcaacggatgctgcattttttaatatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatg 20707626  T
Q  112 atgtcctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcatt 211  Q
    |||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  20707627 atgtactttcttgacataacattgaagtgtctaaccttcacgatcaagggtatgatggtgcaagcaatatgaaagaagaatggaacaatttacaagcgtt 20707726  T
Q  212 gtttatgaaggattgtctctaagcatac-acactcannnnnnngctcatatattacaacttgcctt 276  Q
    |||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||    
T  20707727 gtttatgaaggattgtctctaagcatactacactcatttttttgctcatatattacaacttgcctt 20707792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 20875571 - 20875836
Alignment:
Q  12 ctttcatggctagaatattcaccttcaaagggtgctgcannnnnnnatatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatg 111  Q
    ||||||||||||||||||| |||||||| || |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20875571 ctttcatggctagaatatttaccttcaacggatgctgcattttttaatatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatg 20875670  T
Q  112 atgtcctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcatt 211  Q
    |||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  20875671 atgtactttcttgacataacattgaagtgtctaaccttcacgatcaagggtatgatggtgcaagcaatatgaaagaagaatggaacaatttacaagcgtt 20875770  T
Q  212 gtttatgaaggattgtctctaagcatac-acactcannnnnnngctcatatattacaacttgcctt 276  Q
    |||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||    
T  20875771 gtttatgaaggattgtctctaagcatactacactcatttttttgctcatatattacaacttgcctt 20875836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 41595380 - 41595550
Alignment:
Q  58 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 157  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| |||||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  41595380 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcagtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 41595479  T
Q  158 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 228  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  41595480 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 41595550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 31420677 - 31420788
Alignment:
Q  117 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 216  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  31420677 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 31420776  T
Q  217 tgaaggattgtc 228  Q
    |||| |||||||    
T  31420777 tgaaagattgtc 31420788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 41594706 - 41594734
Alignment:
Q  14 ttcatggctagaatattcaccttcaaagg 42  Q
    |||||||||||||||||||||||||||||    
T  41594706 ttcatggctagaatattcaccttcaaagg 41594734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 23122459 - 23122289
Alignment:
Q  58 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 157  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| |||||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  23122459 atatgagatgtgttactagcactacatctttaagtcttaaggaagcagtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 23122360  T
Q  158 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 228  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  23122359 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 23122289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 14008231 - 14008401
Alignment:
Q  58 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 157  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  14008231 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 14008330  T
Q  158 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 228  Q
    | |||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  14008331 atggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 14008401  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 22271729 - 22271618
Alignment:
Q  117 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 216  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  22271729 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 22271630  T
Q  217 tgaaggattgtc 228  Q
    |||| |||||||    
T  22271629 tgaaagattgtc 22271618  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 14007557 - 14007585
Alignment:
Q  14 ttcatggctagaatattcaccttcaaagg 42  Q
    |||||||||||||||||||||||||||||    
T  14007557 ttcatggctagaatattcaccttcaaagg 14007585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 23123138 - 23123110
Alignment:
Q  14 ttcatggctagaatattcaccttcaaagg 42  Q
    |||||||||||||||||||||||||||||    
T  23123138 ttcatggctagaatattcaccttcaaagg 23123110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 43523986 - 43524156
Alignment:
Q  58 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 157  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  43523986 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 43524085  T
Q  158 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 228  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  43524086 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 43524156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 5087406 - 5087517
Alignment:
Q  117 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 216  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||||||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  5087406 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgatggtgctagcaatatgagaggagaatggaattgtttacaagcacttttta 5087505  T
Q  217 tgaaggattgtc 228  Q
    |||| |||||||    
T  5087506 tgaaagattgtc 5087517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 43523313 - 43523341
Alignment:
Q  14 ttcatggctagaatattcaccttcaaagg 42  Q
    |||||||||||||||||||||||||||||    
T  43523313 ttcatggctagaatattcaccttcaaagg 43523341  T

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Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 22511062 - 22510896
Alignment:
Q  58 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 157  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||| |||||    
T  22511062 atatgagatgtgttactagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcatggtca 22510963  T
Q  158 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggat 224  Q
    ||||||| |||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||    
T  22510962 agggtataatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggat 22510896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 2735308 - 2735419
Alignment:
Q  117 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 216  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  2735308 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 2735407  T
Q  217 tgaaggattgtc 228  Q
    |||| |||||||    
T  2735408 tgaaagattgtc 2735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 40924354 - 40924465
Alignment:
Q  117 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 216  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  40924354 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 40924453  T
Q  217 tgaaggattgtc 228  Q
    |||| |||||||    
T  40924454 tgaaagattgtc 40924465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 22127933 - 22127789
Alignment:
Q  84 tctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatga 183  Q
    ||||||| ||||| |||| |||| | || | | |||| |||||||||| ||||||| |||||| ||   |||||||||||||| ||||| ||||||||||    
T  22127933 tctttaactcttaaggaagcagtatgtggtatactttttcgacataactttgacgtttctaacatttgtggtcaagggtatgacggtgctagcaatatga 22127834  T
Q  184 aataagaatggaacaatttacaagcattgtttatgaaggattgtc 228  Q
     |  |||||||||   |||||||||| | |||||||| |||||||    
T  22127833 gaggagaatggaatggtttacaagcactatttatgaaagattgtc 22127789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 50413725 - 50413895
Alignment:
Q  58 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 157  Q
    |||| |||||||||||||||||||||||||||| ||||| |||| |||||| |||| | |||||||||| |||| |||| ||||||||||||| ||||||    
T  50413725 atatgagatatgttacaaacactacatctttaactcttaaggaagcagtgtgtgatatgctttctcgacgtaaccttgatgtgtctaaccttcgcggtca 50413824  T
Q  158 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 228  Q
    ||||| ||||| | ||||||||| || |  |||||||||   || | ||||||||||||| ||||||||||    
T  50413825 agggtgtgatgatacaagcaatacgagaggagaatggaatggttaataagcattgtttattaaggattgtc 50413895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 14798549 - 14798457
Alignment:
Q  117 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagca 209  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   ||||||||||    
T  14798549 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 14798457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 95980 - 96091
Alignment:
Q  117 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 216  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  95980 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 96079  T
Q  217 tgaaggattgtc 228  Q
    |||| |||||||    
T  96080 tgaaagattgtc 96091  T

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Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 41179 - 41271
Alignment:
Q  117 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagca 209  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   ||||||||||    
T  41179 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 41271  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 27132127 - 27132206
Alignment:
Q  117 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaa 196  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| |||||  ||||||||| |  |||||||||    
T  27132127 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctggcaatatgagaggagaatggaa 27132206  T

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