View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19276_low_5 (Length: 246)
Name: NF19276_low_5
Description: NF19276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19276_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 28656126 - 28655900
Alignment:
| Q |
17 |
atgtttcttattcagcagttgaaannnnnnnaagtcggaatattctccataaagttactttcttgttgtgtttgatttggagagatgtgctttccgagtt |
116 |
Q |
| |
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||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
28656126 |
atgtttcttattctgcagttgaaatttttttaagtcgaaatattctccataaagttactttcttgttgtgtttgatttgaagagatgtgtttttcgagtt |
28656027 |
T |
|
| Q |
117 |
tgaagatgaagaaattggaaatgattttttcacat----taatgagttttaaaatggagttgaaaagattaatttttaggttgatgaatttctgaaaaat |
212 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28656026 |
tgaagatgaagaaattggaaatgattttttcacattaattaatgggttttaaaatggagttgaaaagattaatttttaggttgatgaatttctgaaaaat |
28655927 |
T |
|
| Q |
213 |
ttgctgagattgtttggggtgatgatg |
239 |
Q |
| |
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|||||||||||||||| |||||||||| |
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| T |
28655926 |
ttgctgagattgtttgtggtgatgatg |
28655900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 34439291 - 34439455
Alignment:
| Q |
75 |
tttcttgttgtgtttgatttggagagatgtgctttccgagtttgaagatgaagaaattggaaatgattttttcacattaatgagttttaaaatggagttg |
174 |
Q |
| |
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||||| ||| ||||||||||||||| || | ||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |
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| T |
34439291 |
tttctggttatgtttgatttggagaaatatactttctaagtttgaagatgaagaaattggaaatga-tttttcacatttatgagttttaaaattgagttg |
34439389 |
T |
|
| Q |
175 |
aaaagattaa-tttttaggttgatgaatttctgaaaaatttgctgagattgtttggggtgatgatg |
239 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||||| || ||||||||| |||||||||| |
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| T |
34439390 |
aaaagattaattttttgggttgatgaatttctgaaaaatttgttgggattgtttgtggtgatgatg |
34439455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 11243215 - 11243062
Alignment:
| Q |
75 |
tttcttgttgtgtttgatttggagagatgtgctttccgagtttgaagatgaagaaattggaaatgattttttcacattaatgagttttaaaatggagttg |
174 |
Q |
| |
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||||| |||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| || |
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| T |
11243215 |
tttctggttgtgtttgatttcgagagatgtactttctgagtttgaaaatgaagaaattggaaatgat-ttttcacatttatgagttttaaaatggaggtg |
11243117 |
T |
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| Q |
175 |
aaaagattaatttt-taggttgatgaatttctgaaaaatttgctgagattgtttg |
228 |
Q |
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|||||||||||||| | ||||||||||||||| ||| ||||||||||||||||| |
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| T |
11243116 |
aaaagattaattttctgggttgatgaatttctaaaatttttgctgagattgtttg |
11243062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 31281546 - 31281320
Alignment:
| Q |
17 |
atgtttcttattcagcagttgaaannnnnnnaagtcggaatattctccataaagttactttcttgttgtgtttgatttggagagatgtgctttccgagtt |
116 |
Q |
| |
|
||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
31281546 |
atgtttcttattctgcagttgaaatttttttaagtcgaaatattctccataaagttactttcttgttgtgtttgatttgaagagatgtgtttttcgagtt |
31281447 |
T |
|
| Q |
117 |
tgaagatgaagaaattggaaatgattttttcacat----taatgagttttaaaatggagttgaaaagattaatttttaggttgatgaatttctgaaaaat |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31281446 |
tgaagatgaagaaattggaaatgattttttcacattaattaatgggttttaaaatggagttgaaaagattaatttttaggttgatgaatttctgaaaaat |
31281347 |
T |
|
| Q |
213 |
ttgctgagattgtttggggtgatgatg |
239 |
Q |
| |
|
|||||||||||||||| |||||||||| |
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| T |
31281346 |
ttgctgagattgtttgtggtgatgatg |
31281320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 55425157 - 55425383
Alignment:
| Q |
17 |
atgtttcttattcagcagttgaaannnnnnnaagtcggaatattctccataaagttactttcttgttgtgtttgatttggagagatgtgctttccgagtt |
116 |
Q |
| |
|
||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
55425157 |
atgtttcttattctgcagttgaaatttttttaagtcgaaatattctccataaagttactttcttgttgtgtttgatttgaagagatgtgtttttcgagtt |
55425256 |
T |
|
| Q |
117 |
tgaagatgaagaaattggaaatgattttttcac----attaatgagttttaaaatggagttgaaaagattaatttttaggttgatgaatttctgaaaaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55425257 |
tgaagatgaagaaattggaaatgattttttcacattaattaatgggttttaaaatggagttgaaaagattaatttttaggttgatgaatttctgaaaaat |
55425356 |
T |
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| Q |
213 |
ttgctgagattgtttggggtgatgatg |
239 |
Q |
| |
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|||||||||||||||| |||||||||| |
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| T |
55425357 |
ttgctgagattgtttgtggtgatgatg |
55425383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 42511281 - 42511445
Alignment:
| Q |
75 |
tttcttgttgtgtttgatttggagagatgtgctttccgagtttgaagatgaagaaattggaaatgattttttcacattaatgagttttaaaatggagttg |
174 |
Q |
| |
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||||| ||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||| |
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| T |
42511281 |
tttctcgttatgtttgatttggagagatatactttctaagtttgaagatgaagaaattggaaaaga-tttttcacatttatgagttttaaaattgagttg |
42511379 |
T |
|
| Q |
175 |
aaaagattaa-tttttaggttgatgaatttctgaaaaatttgctgagattgtttggggtgatgatg |
239 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||| || ||||||||| |||||||||| |
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|
| T |
42511380 |
aaaagattaattttttgggttgatgaatttctgaaaaatttgttgggattgtttgtggtgatgatg |
42511445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 19465104 - 19464940
Alignment:
| Q |
75 |
tttcttgttgtgtttgatttggagagatgtgctttccgagtttgaagatgaagaaattggaaatgattttttcacattaatgagttttaaaatggagttg |
174 |
Q |
| |
|
||||| ||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||| |
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| T |
19465104 |
tttctggttatgtttgatttggagagatatactttctaagtttgaagatgaagaaattggaaatgat-ttttcaaatttatgagttttaaaattgagttg |
19465006 |
T |
|
| Q |
175 |
aaaagattaa-tttttaggttgatgaatttctgaaaaatttgctgagattgtttggggtgatgatg |
239 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||| || ||||||||| |||||||||| |
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|
| T |
19465005 |
aaaagattaattttttgggttgatgaatttctgaaaaatttgttgggattgtttgtggtgatgatg |
19464940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 36511002 - 36511156
Alignment:
| Q |
85 |
tgtttgatttggagagatgtgctttccgagtttgaagatgaagaaattggaaatgattttttcacattaatgagttttaaaatggagttgaaaagattaa |
184 |
Q |
| |
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|||||||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||| |
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| T |
36511002 |
tgtttgatttggagagatatactttctaagtttgaagatgaagaaattggaaatga-tttttcaaatttatgagttttaaaattgagttgaaaagattaa |
36511100 |
T |
|
| Q |
185 |
-tttttaggttgatgaatttctgaaaaatttgctgagattgtttggggtgatgatg |
239 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||||| |||||||||| |
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|
| T |
36511101 |
ttttttgggttgatgaatttctgaaaaatttgttgggattgtttgtggtgatgatg |
36511156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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