View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_high_1 (Length: 777)
Name: NF19277_high_1
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Original strand, 5056294 - 5056829
Alignment:
| Q |
18 |
ttccttgatcaattatatactccttctatttcatttatatctttacctatctccctttcataaatctcaacgtctcacaaataacgggagagccattata |
117 |
Q |
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| T |
5056294 |
ttccttgatcaattatatactcattctatttcatttatatctttacctatctccctttcataaatctcaacgtctcacaaataacgggagagccattata |
5056393 |
T |
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| Q |
118 |
tcgtcttgcttccaatgtctccctcaattagctgataaaatggctttacctatttcccttacaaatgaagtttatgtctaccatccctgagtcgaaagat |
217 |
Q |
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| T |
5056394 |
tcctctcaca---------------aattagctgataaaatggctttacctatttcccttacaaatgaagttcatgtctaccatccctgagtcgaaagat |
5056478 |
T |
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| Q |
218 |
caatttcggagagcacgtcnnnnnnngcattgagtgcgaaaatggagacattgatataacgaaataggtttatgtctaatcatccaaaccaagtattttc |
317 |
Q |
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| T |
5056479 |
caatttcggagagcaagtcaaaaaaagcattgagtgcaaaaatggagacattgatataacgaaataggtttatatctaatcatccaaaccaagtat---- |
5056574 |
T |
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| Q |
318 |
attagattcttaactcactactattaatctcaacacaatgagaaattaattacacattgtcattgtaacttacaaaaaataaaagaggaagaaaatatgt |
417 |
Q |
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| T |
5056575 |
--------------tcac----attaatcccaacacaatgagaaattaattacacattgtcattgtaacttacaaaaaataaaagaggaagaaaatatgt |
5056656 |
T |
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| Q |
418 |
agcatccaatgacttggtctacaagcctccaatgtttccacctaatttacaaactatttttcctcttataaatattgttctcaaccttttaaccaccaag |
517 |
Q |
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| T |
5056657 |
agcatccaatgacttggtctacaatcctccaatgtttccacctaatttacaaactatttttactcttataaatattgttctcaaccttttaaccaccaag |
5056756 |
T |
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| Q |
518 |
aatgcccaaaagaatgaagatgcaaccagctatatatttataggttttccaaaagtgataattcatcgggagagtgg |
594 |
Q |
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| T |
5056757 |
aatgcccaaaagaaggaagatgcaaccagc----tatttataggttttccaaaagtgataattcatcgggagagtgg |
5056829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 590 - 769
Target Start/End: Original strand, 5056864 - 5057043
Alignment:
| Q |
590 |
agtgggtctctgccagttctaccacatgggtataaaactgccttccctcgtcagttgagtgaaatctttgatggaggcgaaatctccctattttggcttg |
689 |
Q |
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| T |
5056864 |
agtgggtctctgccagttctaccacatgggtataaaactgccttccctcgtcagttgagtgaaatctttgatggaggcgaaatctccctattttggcttg |
5056963 |
T |
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| Q |
690 |
agttatctgccttgaatgccatgtcagtgcttttctcgccaggcgagtagcttgattaacctcattttagctatattctt |
769 |
Q |
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| T |
5056964 |
agttatctgccttgaatgccatgtcagtgcttttctcgccaggcgagtagcttgattaacctcattttagctattttctt |
5057043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 17235770 - 17235827
Alignment:
| Q |
16 |
atttccttgatcaattatatactccttctatttcatttatatctttacctatctccct |
73 |
Q |
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|||||||||||| |||||||||| ||||||||||| | || |||| |||||||||||| |
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| T |
17235770 |
atttccttgatcgattatatacttcttctatttcaatcatgtcttcacctatctccct |
17235827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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