View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19277_high_14 (Length: 300)

Name: NF19277_high_14
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19277_high_14
NF19277_high_14
[»] chr1 (1 HSPs)
chr1 (15-300)||(46141186-46141456)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 46141186 - 46141456
Alignment:
Q  15 actttgtatggatccatggaggatgatgagtttacattcgcaagtaagaggaggagatgcaaggaaagaatagcaatagcagtaatgtgtagtgacatag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46141186 actttgtatggatccatggaggatgatgagtttacattcgcaagtaagaggaggagatgcaaggaaagaatagcaatagcagtaatgtgtagtgacatag 46141285  T
Q  115 acatggctagtactgattagtagttaatggagaattaatagatctgctgtgatttactattactaggttggaaaccacatgtgcaaagatacgtgaatgt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||              |||||||||||||||||||||||||||||||||    
T  46141286 acatggctagtactgattagtagttaatggagaattaatagatctgttgtgat--------------ttggaaaccacatgtgcaaagatacgtgaatgt 46141371  T
Q  215 gaagctctagatcttcaatgatcatgtgatagatcgaatcgaagtcaaagtgaaactattaccttgaatgtgtgacataaaacaac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  46141372 gaagctctagatcttcaatgatcatgtgatagatcgaatcgaagtcaaagtgaaactacta-cttgaatgtgtgacataaaacaac 46141456  T

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