View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19277_high_18 (Length: 259)

Name: NF19277_high_18
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19277_high_18
NF19277_high_18
[»] chr2 (24 HSPs)
chr2 (56-179)||(35492618-35492741)
chr2 (56-179)||(2918359-2918483)
chr2 (56-179)||(19470616-19470740)
chr2 (68-179)||(16582908-16583019)
chr2 (68-179)||(23408819-23408930)
chr2 (56-179)||(41498113-41498237)
chr2 (56-179)||(43492545-43492669)
chr2 (56-179)||(22002797-22002921)
chr2 (56-179)||(43983697-43983821)
chr2 (68-179)||(3936416-3936527)
chr2 (56-179)||(28476477-28476601)
chr2 (56-179)||(40676413-40676537)
chr2 (85-179)||(33404871-33404965)
chr2 (56-179)||(39798980-39799104)
chr2 (56-179)||(17425761-17425885)
chr2 (85-179)||(6977952-6978046)
chr2 (78-179)||(3942495-3942596)
chr2 (85-179)||(15890967-15891060)
chr2 (95-179)||(37311636-37311720)
chr2 (85-179)||(5421258-5421352)
chr2 (85-179)||(17537904-17537998)
chr2 (85-179)||(34520711-34520805)
chr2 (85-179)||(16413269-16413362)
chr2 (85-179)||(24107764-24107858)
[»] chr7 (30 HSPs)
chr7 (56-179)||(42683493-42683617)
chr7 (56-179)||(41623171-41623295)
chr7 (68-179)||(48271754-48271865)
chr7 (56-179)||(21186289-21186413)
chr7 (56-179)||(34141941-34142065)
chr7 (56-179)||(46861190-46861314)
chr7 (74-179)||(36392816-36392921)
chr7 (56-179)||(17840289-17840413)
chr7 (56-179)||(34157770-34157894)
chr7 (68-179)||(28978228-28978339)
chr7 (56-179)||(9366232-9366356)
chr7 (78-179)||(48194078-48194179)
chr7 (78-179)||(40589850-40589951)
chr7 (56-179)||(20565729-20565853)
chr7 (68-179)||(10225173-10225284)
chr7 (85-179)||(43350387-43350481)
chr7 (78-179)||(45362288-45362389)
chr7 (85-179)||(4230593-4230687)
chr7 (85-179)||(28113401-28113495)
chr7 (94-179)||(20877019-20877104)
chr7 (56-179)||(42504370-42504494)
chr7 (85-179)||(22291966-22292060)
chr7 (85-179)||(42736111-42736204)
chr7 (85-179)||(1641677-1641771)
chr7 (85-179)||(15900401-15900495)
chr7 (121-179)||(3380054-3380112)
chr7 (85-179)||(17184320-17184413)
chr7 (91-170)||(16886001-16886080)
chr7 (179-213)||(48314737-48314771)
chr7 (179-211)||(21185699-21185731)
[»] chr6 (21 HSPs)
chr6 (56-179)||(32026618-32026742)
chr6 (56-179)||(32036677-32036801)
chr6 (56-179)||(13616894-13617018)
chr6 (68-179)||(34802178-34802289)
chr6 (56-179)||(13403900-13404024)
chr6 (73-179)||(35020250-35020355)
chr6 (56-179)||(6206456-6206580)
chr6 (56-179)||(11693423-11693547)
chr6 (56-179)||(32691704-32691828)
chr6 (56-179)||(27641146-27641270)
chr6 (78-177)||(29067587-29067686)
chr6 (78-177)||(29109176-29109275)
chr6 (56-179)||(14123794-14123921)
chr6 (85-179)||(12397916-12398009)
chr6 (69-171)||(32133671-32133776)
chr6 (85-179)||(20241346-20241440)
chr6 (85-179)||(22135330-22135424)
chr6 (85-179)||(22142683-22142777)
chr6 (121-179)||(17464492-17464550)
chr6 (69-177)||(33201382-33201493)
chr6 (87-179)||(30763976-30764068)
[»] chr1 (41 HSPs)
chr1 (56-179)||(46142447-46142570)
chr1 (68-179)||(42570783-42570894)
chr1 (73-179)||(18974419-18974525)
chr1 (56-179)||(35525189-35525312)
chr1 (56-179)||(24363059-24363183)
chr1 (56-179)||(26494548-26494672)
chr1 (56-179)||(29437024-29437147)
chr1 (73-172)||(13974034-13974133)
chr1 (68-179)||(41803329-41803440)
chr1 (68-179)||(48227614-48227725)
chr1 (73-179)||(49925441-49925547)
chr1 (78-179)||(51270916-51271017)
chr1 (56-179)||(49428429-49428553)
chr1 (68-179)||(36910984-36911094)
chr1 (56-177)||(49397736-49397858)
chr1 (94-179)||(6436849-6436934)
chr1 (56-176)||(13634414-13634535)
chr1 (78-179)||(29761172-29761273)
chr1 (67-179)||(27485715-27485826)
chr1 (85-179)||(23343637-23343731)
chr1 (85-179)||(35585898-35585992)
chr1 (85-179)||(37779266-37779360)
chr1 (73-179)||(13284565-13284674)
chr1 (85-179)||(15355780-15355874)
chr1 (85-179)||(17685325-17685419)
chr1 (85-177)||(49260677-49260769)
chr1 (85-179)||(38044200-38044294)
chr1 (85-179)||(39856239-39856333)
chr1 (94-179)||(12790266-12790351)
chr1 (85-179)||(24269363-24269457)
chr1 (85-179)||(35186121-35186215)
chr1 (130-179)||(26634200-26634249)
chr1 (119-176)||(44336913-44336970)
chr1 (129-179)||(14172752-14172802)
chr1 (85-174)||(31451454-31451543)
chr1 (94-179)||(40532373-40532458)
chr1 (85-179)||(14771767-14771861)
chr1 (85-179)||(16531186-16531280)
chr1 (179-218)||(46141846-46141885)
chr1 (179-213)||(18975095-18975129)
chr1 (179-213)||(49398444-49398478)
[»] chr8 (19 HSPs)
chr8 (56-179)||(28167883-28168007)
chr8 (73-179)||(42604549-42604655)
chr8 (56-179)||(18439294-18439418)
chr8 (56-179)||(41276155-41276279)
chr8 (73-179)||(41855993-41856099)
chr8 (56-179)||(484369-484493)
chr8 (73-171)||(40703459-40703557)
chr8 (56-177)||(41016967-41017089)
chr8 (56-179)||(24862426-24862550)
chr8 (82-179)||(22550173-22550270)
chr8 (56-179)||(15031436-15031560)
chr8 (56-179)||(45065757-45065881)
chr8 (78-179)||(44051535-44051636)
chr8 (85-179)||(42167932-42168026)
chr8 (85-179)||(38032900-38032994)
chr8 (85-179)||(26487576-26487670)
chr8 (94-179)||(19241653-19241738)
chr8 (94-179)||(19314837-19314922)
chr8 (179-213)||(18438698-18438732)
[»] chr5 (27 HSPs)
chr5 (56-179)||(34682923-34683047)
chr5 (77-179)||(20199451-20199553)
chr5 (56-179)||(18309349-18309473)
chr5 (56-179)||(25499170-25499294)
chr5 (56-179)||(3602431-3602554)
chr5 (56-178)||(35566360-35566483)
chr5 (56-179)||(11347770-11347894)
chr5 (56-179)||(1399297-1399421)
chr5 (56-179)||(11028417-11028541)
chr5 (68-179)||(8538959-8539070)
chr5 (56-179)||(8575257-8575381)
chr5 (56-179)||(27660493-27660617)
chr5 (56-179)||(38855124-38855248)
chr5 (73-179)||(35927076-35927180)
chr5 (56-179)||(19035791-19035915)
chr5 (68-179)||(6346-6457)
chr5 (85-179)||(7484488-7484582)
chr5 (56-179)||(30710569-30710693)
chr5 (93-179)||(1972505-1972591)
chr5 (85-179)||(6792442-6792536)
chr5 (94-179)||(1695937-1696022)
chr5 (85-179)||(7400831-7400925)
chr5 (94-177)||(36349301-36349383)
chr5 (85-179)||(4723086-4723178)
chr5 (100-179)||(31239140-31239219)
chr5 (179-213)||(18310022-18310056)
chr5 (89-179)||(10978414-10978504)
[»] chr4 (37 HSPs)
chr4 (56-179)||(34152279-34152403)
chr4 (76-179)||(56140004-56140107)
chr4 (56-179)||(956447-956571)
chr4 (56-179)||(44559320-44559444)
chr4 (56-179)||(49572190-49572314)
chr4 (68-179)||(51427194-51427306)
chr4 (68-179)||(37867553-37867664)
chr4 (73-179)||(6281518-6281624)
chr4 (78-179)||(34528813-34528914)
chr4 (78-179)||(39589872-39589973)
chr4 (56-179)||(6176430-6176554)
chr4 (56-179)||(9490555-9490679)
chr4 (56-179)||(21016292-21016416)
chr4 (56-179)||(49095713-49095837)
chr4 (78-179)||(1043836-1043937)
chr4 (56-179)||(40352891-40353015)
chr4 (56-179)||(41793917-41794041)
chr4 (68-179)||(49422751-49422858)
chr4 (56-179)||(55797711-55797835)
chr4 (85-179)||(4784336-4784430)
chr4 (85-179)||(36775478-36775572)
chr4 (85-179)||(2774140-2774233)
chr4 (85-179)||(21170599-21170693)
chr4 (85-179)||(42887399-42887493)
chr4 (85-179)||(49790925-49791019)
chr4 (85-179)||(51026784-51026878)
chr4 (85-177)||(4910631-4910723)
chr4 (85-176)||(21410975-21411066)
chr4 (94-179)||(49816409-49816494)
chr4 (85-176)||(21412380-21412471)
chr4 (94-179)||(43888486-43888571)
chr4 (85-179)||(9718377-9718470)
chr4 (85-179)||(25145652-25145746)
chr4 (85-179)||(45940661-45940755)
chr4 (69-179)||(24076226-24076339)
chr4 (103-179)||(17292805-17292881)
chr4 (179-209)||(37959699-37959729)
[»] chr3 (43 HSPs)
chr3 (68-179)||(2429580-2429691)
chr3 (73-179)||(55268074-55268180)
chr3 (56-177)||(45099466-45099588)
chr3 (73-179)||(55205936-55206041)
chr3 (56-179)||(13894900-13895023)
chr3 (56-179)||(41579008-41579132)
chr3 (56-179)||(43570965-43571089)
chr3 (68-179)||(34692297-34692408)
chr3 (68-179)||(52568434-52568545)
chr3 (56-179)||(7247141-7247266)
chr3 (56-179)||(49139167-49139291)
chr3 (56-176)||(46345603-46345724)
chr3 (56-179)||(2267598-2267722)
chr3 (56-179)||(2645989-2646113)
chr3 (79-179)||(43478134-43478234)
chr3 (56-179)||(46405987-46406111)
chr3 (56-179)||(54391424-54391548)
chr3 (76-179)||(49217742-49217845)
chr3 (78-179)||(49611260-49611361)
chr3 (56-179)||(4003267-4003391)
chr3 (56-179)||(34050709-34050833)
chr3 (56-179)||(51694549-51694673)
chr3 (68-179)||(36136010-36136120)
chr3 (56-179)||(3494137-3494261)
chr3 (85-179)||(11377976-11378070)
chr3 (85-179)||(34646216-34646310)
chr3 (73-177)||(50458247-50458354)
chr3 (85-179)||(34471056-34471150)
chr3 (85-179)||(44928588-44928682)
chr3 (87-179)||(51012281-51012373)
chr3 (85-179)||(49274547-49274641)
chr3 (85-170)||(51016416-51016501)
chr3 (87-179)||(27096685-27096777)
chr3 (96-179)||(14632606-14632689)
chr3 (85-179)||(20374972-20375065)
chr3 (85-179)||(27188201-27188295)
chr3 (123-179)||(3497831-3497887)
chr3 (85-179)||(30193663-30193757)
chr3 (85-179)||(10052352-10052445)
chr3 (68-113)||(24701353-24701398)
chr3 (85-179)||(46413283-46413378)
chr3 (179-213)||(7247835-7247869)
chr3 (85-179)||(50341437-50341531)
[»] scaffold0176 (1 HSPs)
scaffold0176 (56-179)||(2866-2990)
[»] scaffold0618 (1 HSPs)
scaffold0618 (56-176)||(4557-4678)
[»] scaffold0589 (1 HSPs)
scaffold0589 (85-179)||(5420-5514)
[»] scaffold0494 (1 HSPs)
scaffold0494 (56-179)||(5837-5961)
[»] scaffold0859 (1 HSPs)
scaffold0859 (85-179)||(1456-1550)
[»] scaffold0258 (1 HSPs)
scaffold0258 (85-179)||(9610-9704)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 35492618 - 35492741
Alignment:
Q  56 caattaggcagtaaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggacc 155  Q
    |||||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35492618 caattaggcattaaaaccattacattcattcttcctcgtcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggacc 35492717  T
Q  156 aaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||||    
T  35492718 aaaatagcatgtcctcccgctcct 35492741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 2918483 - 2918359
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  2918483 caattaggcattaaaagtcattacattcattcttcctcgtcacacaagtcaaccgggttgcccactacagtccatggggcaccttgttttggttgaggac 2918384  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||| ||||||    
T  2918383 caaaatagcatgtcctcctgctcct 2918359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 19470740 - 19470616
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  19470740 caattaggcattaaaagccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctagggcaccttgttttggttgaggac 19470641  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  19470640 caaaatagcatgtcctcccgctcct 19470616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 16582908 - 16583019
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  16582908 aaagtcattacattcattcttcctcgtcacacaagtcaatcgggttgccctctacagtccctagggcaccttgtttttgttgaggaccaaaatagcatgt 16583007  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  16583008 cctcccgctcct 16583019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 23408819 - 23408930
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  23408819 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacaatccctggggtaccttgatttggttgaggaccaaaatagcatgt 23408918  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  23408919 cctcccgctcct 23408930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 41498237 - 41498113
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||||| ||  ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  41498237 caattaggcattaaaagtcattacattcattcttacttgtcacacaagtcaatcgggttggccgctacagtccctggggcaccttgttttggttgaggac 41498138  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  41498137 cgaaatagcatgtcctcccgctcct 41498113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 43492545 - 43492669
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||||    
T  43492545 caattaggcattaaaagtcattacattcattcttcctcgtcacacaagtcaatcgggttgtccgttacagtcactggggcaccttgttttggttgaggac 43492644  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||| |||||    
T  43492645 caaaatagcatgtcctcccactcct 43492669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 22002797 - 22002921
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  22002797 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 22002896  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  22002897 cgaaatagcatgtcctcccgctcct 22002921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 43983697 - 43983821
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  43983697 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 43983796  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  43983797 cgaaatagcatgtcctcccgctcct 43983821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 3936527 - 3936416
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||| |||||||||||    
T  3936527 aaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgt 3936428  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  3936427 cctcccgctcct 3936416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 28476477 - 28476601
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| ||||| || ||| || |||||||||||| || ||||||||||||||||||||    
T  28476477 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaattggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 28476576  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  28476577 cgaaatagcatgtcctcccgctcct 28476601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 40676537 - 40676413
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||  |||||||||| ||||||||||||  ||||||||| ||||||||||||||||| || |||||    
T  40676537 caattaggcattaaaagccattacattcattcttcctagtcacacaagtgaatcgggttgcctgctacagtccatggggcaccttgttttgattaaggac 40676438  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
     ||||||||||||||||||||||||    
T  40676437 gaaaatagcatgtcctcccgctcct 40676413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 33404871 - 33404965
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  33404871 tcttcctcctcacacaagtcaatcgggttgccctcgacagtccctggggcacctacttttggttgaggaccaaaatagcatgtcctaccgctcct 33404965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 39799104 - 39798980
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||| | ||| || ||||||| |||| || ||||||||||||||||||||    
T  39799104 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatctgcttgtccgctacagttcctgcggtaccttgttttggttgaggac 39799005  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  39799004 cgaaatagcatgtcctcccgctcct 39798980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 17425761 - 17425885
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| || || || ||| || |||||||||||| || ||||||||||||||||||||    
T  17425761 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcgattggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 17425860  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
      |||||||||||||||||||||||    
T  17425861 tgaaatagcatgtcctcccgctcct 17425885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 6977952 - 6978046
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||| ||||| |||||| || | ||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  6977952 tcttcctcatcacacaaatcaattgggttgtcctcgacagtcccttgggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcct 6978046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 3942495 - 3942596
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| | ||| |||||||||||||||||||| ||| ||||||||| ||  |||||||||||| |||||||||||||||||||| |||||||||||    
T  3942495 cattcattcattctcgtcacacaagtcaatcgggtttcccgctacagtccatgccgcaccttgttttagttgaggaccaaaatagcatatcctcccgctc 3942594  T
Q  178 ct 179  Q
    ||    
T  3942595 ct 3942596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 15891060 - 15890967
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| |  | ||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  15891060 tcttcctcatcacacaagtcaattgggttgtct-cgacagtccctggggcacctgcttttggttgaggaccaaaatagcatgtccttccgctcct 15890967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 37311720 - 37311636
Alignment:
Q  95 cacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||| || | ||||||||||||||||||  |||||| |||||| |||||||||||||||||||||||||    
T  37311720 cacacaagtcaatcgggttgtcctcgacagtccctggggcacctacttttggctgaggatcaaaatagcatgtcctcccgctcct 37311636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 5421258 - 5421352
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | | ||||||||||||||||  |||||| |||||||||||||||||||| || ||||||||    
T  5421258 tcttcctcatcacacaagtcaattgggttgtcctcgagagtccctggggcacctgcttttggctgaggaccaaaatagcatgttctgccgctcct 5421352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 17537998 - 17537904
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | ||||||  |||| |||||  |||||| ||||||||||||||||||||||||||||||||    
T  17537998 tcttcctcatcacacaagtcaattgggttgtcctcgacagtctatgggacacctgtttttggctgaggaccaaaatagcatgtcctcccgctcct 17537904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 34520805 - 34520711
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| ||| || || | || |||||| ||||||||  |||||| ||| ||||||||||||||||||||||||||||    
T  34520805 tcttcctcatcacacaagtcaattgggatgtcctcgacggtccctcgggcacctgcttttggctgaagaccaaaatagcatgtcctcccgctcct 34520711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 16413362 - 16413269
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||||||||||||||||||| || |  |||||||||  ||||||  |||||||||| |||||||||| |||||| ||||||||||    
T  16413362 tcttcctcgtcacacaagtcaatcgggttgtcctcgccagtccctgcagcacctgcttttggttga-gaccaaaataacatgtcttcccgctcct 16413269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 24107858 - 24107764
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||  |||||||||||||| |||||| || | ||||||| | || |||||  |||||| |||||||||||||||||| ||||| |||||||    
T  24107858 tcttccttctcacacaagtcaattgggttgtcctcaacagtccataggacacctgcttttggctgaggaccaaaatagcatttcctctcgctcct 24107764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 42683493 - 42683617
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42683493 caattaggcattaaaagccattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggac 42683592  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  42683593 caaaatagcatgtcctcccgctcct 42683617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 41623171 - 41623295
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  41623171 caattaggcattaaaagccattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggatgaggac 41623270  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||| ||||||||    
T  41623271 caaaatagcatgtccttccgctcct 41623295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 48271754 - 48271865
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48271754 aaagccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 48271853  T
Q  168 cctcccgctcct 179  Q
    | ||||||||||    
T  48271854 catcccgctcct 48271865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 21186413 - 21186289
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  21186413 caattaggcattaaatgtcattacattcattcttcctcgtcacacaagtcaatcgagttgcccgctacagtccctagggcaccttgttttggttgaggac 21186314  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    ||||||| |||||||||||||||||    
T  21186313 caaaataacatgtcctcccgctcct 21186289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 34141941 - 34142065
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  34141941 caattaggcattaaaagtcattacattcattcctcctcgtcacacaagtcaatcgggtttcccgctacagtccctgtggcaccttgttttggttgaggac 34142040  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||| ||||||||||    
T  34142041 caaaatagcatgtcatcccgctcct 34142065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 46861314 - 46861190
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46861314 caattaggcattaaaagccattacattcattcttcctcgtcatacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggac 46861215  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    ||||||||||| ||||||| |||||    
T  46861214 caaaatagcatttcctcccactcct 46861190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 36392921 - 36392816
Alignment:
Q  74 attacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctccc 173  Q
    |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  36392921 attacattaattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctgaggcaccttgttttggttgaggaccaaaataacatgtcctccc 36392822  T
Q  174 gctcct 179  Q
    ||||||    
T  36392821 gctcct 36392816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 17840289 - 17840413
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  17840289 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcgggttgcccgctacagtccctgcggtaccttgttttggttgaggac 17840388  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  17840389 cgaaatagcatgtcctcccgctcct 17840413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 34157770 - 34157894
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  34157770 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcgggttgcccgctacagtccctgtggtaccttgttttggttgaggac 34157869  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  34157870 cgaaatagcatgtcctcccgctcct 34157894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 28978339 - 28978228
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||||| |||||    
T  28978339 aaagtctttacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctgtggcgccttgtttttgttgaggaccaaaataacatgt 28978240  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  28978239 cctcccgctcct 28978228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 9366356 - 9366232
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  9366356 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 9366257  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  9366256 cgaaatagcatgtcctcccgctcct 9366232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 48194078 - 48194179
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||| ||||||||||||||| |||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48194078 cattcattcatcctcgtcacacaagtcaatcaggtttcccgctatagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 48194177  T
Q  178 ct 179  Q
    ||    
T  48194178 ct 48194179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 40589850 - 40589951
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||| |||||||||||||||||||| ||  |||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  40589850 cattcattcatcctcgtcacacaagtcaatcgggtttcctgctacggtccctgcggcaccttgttttggttgatgaccaaaatagcatgtcctcccgctc 40589949  T
Q  178 ct 179  Q
    ||    
T  40589950 ct 40589951  T

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Target: chr7; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 20565729 - 20565853
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| || || || ||| || |||||||||||| || ||||||||||||||||||||    
T  20565729 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcgattggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 20565828  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  20565829 cgaaatagcatgtcctcccgctcct 20565853  T

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Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 10225173 - 10225284
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||| || ||||| || ||| |||||||||||||||||||| ||||||||||||| |    
T  10225173 aaagccattatattcattcttcctcgtcacacaagtcaatcgggttggccgctacaatctctgaggcaccttgttttggttgagaaccaaaatagcattt 10225272  T
Q  168 cctcccgctcct 179  Q
    || |||||||||    
T  10225273 ccccccgctcct 10225284  T

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Target: chr7; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 43350481 - 43350387
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  43350481 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggggcacctgcttttggttgaagaccaaaatagcatgtcctcccgctcct 43350387  T

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Target: chr7; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 45362389 - 45362288
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||| ||||||||||||||||| || ||  ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  45362389 cattcattcatcctcgtcacacaagtcaatcggatttcctgctacagtccttgcggcaccttcttttggttgaggaccaaaatagcatgtcctcccgctc 45362290  T
Q  178 ct 179  Q
    ||    
T  45362289 ct 45362288  T

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Target: chr7; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 4230593 - 4230687
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||||||||||| |||||| || | ||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  4230593 tcttcctcgtcacacaagtcaattgggttgtcctcgacagtccctggggcacctgcttttggttgaggatcaaaatagcatgtcctcccgctcct 4230687  T

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Target: chr7; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 28113495 - 28113401
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||| | || | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  28113495 tcttcctcgtcacaaaggttactcgggttgcccgctacagtccctgtggcaccttgttttggttgaggaccaaaataacatgtcctcccgctcct 28113401  T

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Target: chr7; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 20877104 - 20877019
Alignment:
Q  94 tcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||||||||| || | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  20877104 tcacacaattcaatcgggttgtcctcgacagtccctggggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcct 20877019  T

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Target: chr7; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 42504494 - 42504370
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||||  |||||||||||| |||||||| ||||| || ||| || |||||||||||| || ||||| ||||||||||||||    
T  42504494 caattaggcattaaaagccattactgtcattcttcctcgtcacacaaatcaattggcttgtccgctacagtccctgcggtaccttcttttggttgaggac 42504395  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  42504394 cgaaatagcatgtcctcccgctcct 42504370  T

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Target: chr7; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 22291966 - 22292060
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||  ||||| || | ||||||||||||||||||  |||||| | ||||||||||||||||||||||||||||||    
T  22291966 tcttcctcatcacacaagtcaattaggttgtcctcgacagtccctggggcacctgcttttggctcaggaccaaaatagcatgtcctcccgctcct 22292060  T

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Target: chr7; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 42736111 - 42736204
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | |||||||||||| |||||  |||||| |||||||||||||||||||| |||||||||||    
T  42736111 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggg-cacctgcttttggctgaggaccaaaatagcatgttctcccgctcct 42736204  T

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Target: chr7; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 1641771 - 1641677
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||||||||||  || ||| || |  |||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  1641771 tcttcctcgtcacacaagtcaactggattgtcctcgccagttcctggggcaccttcttttggttgaggaccaaaataacatgtcctcccgctcct 1641677  T

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Target: chr7; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 15900495 - 15900401
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||||| || |||||||||| || | ||||||||||||||||||  |||||  |||||||||||||||||| ||||||| |||||    
T  15900495 tcttcctcgtcacacaggttaatcgggttgtcctcgacagtccctggggcacctgcttttgactgaggaccaaaatagcatatcctcccactcct 15900401  T

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Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 3380112 - 3380054
Alignment:
Q  121 acagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||| || |||||||  |||||||||||||||||||||||||||||||||||||||    
T  3380112 acagtccttgtggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcct 3380054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 17184320 - 17184413
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||| |||||||||||||||| |||||| || | ||| ||| ||||||||||  |||||| | |||| ||| |||||||||||||||||||||    
T  17184320 tcttccgcatcacacaagtcaattgggttgtcctcgacaatccatggggcacctgcttttggctaagga-caatatagcatgtcctcccgctcct 17184413  T

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Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 16886080 - 16886001
Alignment:
Q  91 tcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcct 170  Q
    |||||||| |||||||| |||||| || | | ||| |||| |||||||  ||||||||||||||||||||| || |||||    
T  16886080 tcatcacataagtcaattgggttgtcctcgagagttcctgtggcacctacttttggttgaggaccaaaataacaagtcct 16886001  T

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Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 48314737 - 48314771
Alignment:
Q  179 taactgccgaaaattggttataagaacataacaga 213  Q
    |||||||| ||||||||||||||||||||||||||    
T  48314737 taactgccaaaaattggttataagaacataacaga 48314771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 21185699 - 21185731
Alignment:
Q  179 taactgccgaaaattggttataagaacataaca 211  Q
    |||||||||||||||||||||||||||| ||||    
T  21185699 taactgccgaaaattggttataagaacagaaca 21185731  T

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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 32026742 - 32026618
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32026742 caattaggcattaaaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggac 32026643  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||| |||||||||    
T  32026642 caaaatagcatgtccacccgctcct 32026618  T

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Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 32036801 - 32036677
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32036801 caattaggcattaaaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggac 32036702  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||| |||||||||    
T  32036701 caaaatagcatgtccacccgctcct 32036677  T

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Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 13617018 - 13616894
Alignment:
Q  56 caattaggcagt-aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| | |||| |||||||||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  13617018 caattaggcattgaaagccattacattcattcttccttgtcacacaagtcaatcgggttgctcgctacagtccctggggcaccttgttttggttgaggac 13616919  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  13616918 caaaatagcatgtcctcccgctcct 13616894  T

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Target: chr6; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 34802289 - 34802178
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34802289 aaagtcattacattcattcttcctcgtcacacaagtcaaccgggttgcctgctacagtccctggggcaccttgttttggttgaggacaaaaatagcatgt 34802190  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  34802189 cctcccgctcct 34802178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 13403900 - 13404024
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  13403900 caattaggcattaaaagccattacattcattcttcctcttcacacaagtctatcgggttgcccgctacagtccctggggcacctttttttggttgaggac 13403999  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | ||||||||||||||| |||||||    
T  13404000 cgaaatagcatgtcctctcgctcct 13404024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 35020355 - 35020250
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 172  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  35020355 cattacattcattcttcctcgtcacacaagtcaatcgggttgcc-actacagtccctagggcaccttgttttggttgaggaccgaaataacatgtcctcc 35020257  T
Q  173 cgctcct 179  Q
    |||||||    
T  35020256 cgctcct 35020250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 6206456 - 6206580
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  6206456 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 6206555  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  6206556 cgaaatagcatgtcctcccgctcct 6206580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 11693423 - 11693547
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  11693423 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 11693522  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  11693523 cgaaatagcatgtcctcccgctcct 11693547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 32691828 - 32691704
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  32691828 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 32691729  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  32691728 cgaaatagcatgtcctcccgctcct 32691704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 27641146 - 27641270
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| ||||| || ||| || |||||||||||| || ||||||||||||||||||||    
T  27641146 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaattggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 27641245  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  27641246 cgaaatagcatgtcctcccgctcct 27641270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 29067587 - 29067686
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||  ||||||||||||||||||||  || |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29067587 cattcattcatccttgtcacacaagtcaatcgggttttccgctacagcccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 29067686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 29109176 - 29109275
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||  ||||||||||||||||||||  || |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29109176 cattcattcatccttgtcacacaagtcaatcgggttttccgctacagcccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 29109275  T

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Target: chr6; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 14123794 - 14123921
Alignment:
Q  56 caattaggcagta-aagtcattacattcattcttcctcatc---acacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgag 151  Q
    |||||||||| || |||||||||||||||||| || |||||   |||||||||||||||||||||| |||||||||||| |||||||  ||||| || ||    
T  14123794 caattaggcattacaagtcattacattcattcatcttcatcgtcacacaagtcaatcgggttgcccgctacagtccctgcggcacctacttttgattaag 14123893  T
Q  152 gaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||| |||||||||||||| |||||    
T  14123894 gaccaaagtagcatgtcctcccactcct 14123921  T

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Target: chr6; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 12397916 - 12398009
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | |||||||||||| |||||  |||||| |||||||||||||| |||||||||||||||||    
T  12397916 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggg-cacctgcttttggctgaggaccaaaatatcatgtcctcccgctcct 12398009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 32133776 - 32133671
Alignment:
Q  69 aagtcattacattcattc---ttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcat 165  Q
    ||||||||||||||||||   |||||| ||||||| ||||||| ||||| |  | ||||||||||||| ||||  |||||| ||||||||||||||||||    
T  32133776 aagtcattacattcattcatcttcctcgtcacacaggtcaatcaggttgtcatcgacagtccctggggaacctgcttttggctgaggaccaaaatagcat 32133677  T
Q  166 gtcctc 171  Q
    ||||||    
T  32133676 gtcctc 32133671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 20241440 - 20241346
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||||||||||| |||||| || | ||||||||| ||| ||||  |||||||||||||||||||||||||  ||||| ||||||    
T  20241440 tcttcctcgtcacacaagtcaattgggttgtcctcaacagtcccttgggaacctgcttttggttgaggaccaaaatagcataacctcctgctcct 20241346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 22135424 - 22135330
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||||||||||| |||||| || | ||||||||| ||| ||||  |||||||||||||||||||||||||  ||||| ||||||    
T  22135424 tcttcctcgtcacacaagtcaattgggttgtcctcaacagtcccttgggaacctgcttttggttgaggaccaaaatagcataacctcctgctcct 22135330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 22142777 - 22142683
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||||||||||| |||||| || | ||||||||| ||| ||||  |||||||||||||||||||||||||  ||||| ||||||    
T  22142777 tcttcctcgtcacacaagtcaattgggttgtcctcaacagtcccttgggaacctgcttttggttgaggaccaaaatagcataacctcctgctcct 22142683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 17464550 - 17464492
Alignment:
Q  121 acagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||||| |||||  ||||||||||||||||||||| |||||||||||||||||    
T  17464550 acagtccctgggacacctgcttttggttgaggaccaaaataacatgtcctcccgctcct 17464492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 33201382 - 33201493
Alignment:
Q  69 aagtcattacattcattc---ttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcat 165  Q
    ||||||||||||||| ||   |||||| ||||||||||||||  ||||| || | ||| ||||||| ||||||  ||||||||||||||| | ||| |||    
T  33201382 aagtcattacattcaatcatcttcctcgtcacacaagtcaattaggttgtcctcgacattccctggcgcacctgattttggttgaggaccgatataacat 33201481  T
Q  166 gtcctcccgctc 177  Q
    ||||| ||||||    
T  33201482 gtccttccgctc 33201493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 30764068 - 30763976
Alignment:
Q  87 ttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||| |||||||||||||| |||||| || | ||||||| ||||||||    ||||||||||||||| ||||| |||||| | ||||||||    
T  30764068 ttcctcgtcacacaagtcaattgggttgtcctcgacagtccatggggcactcgcttttggttgaggaccgaaataacatgtcattccgctcct 30763976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 46142570 - 46142447
Alignment:
Q  56 caattaggcagtaaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggacc 155  Q
    |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  46142570 caattaggcaataaggccattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacagtcccaggggcaccttgttttggttgaggacc 46142471  T
Q  156 aaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||||    
T  46142470 aaaatagcatgtcctcccgctcct 46142447  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 42570894 - 42570783
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42570894 aaagtcattacattcattcttcctcgtcacacaagtcaatcgggttgccctctacagtccctgaggcaccttgttttggttgaggaccaaaatagcatgt 42570795  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  42570794 cctcccgctcct 42570783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 18974419 - 18974525
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 172  Q
    |||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18974419 cattacattcattcttcctcgtcacacaagtcaatcgggttgtccgctacagtccctggggcaccttgttttggttgaggaccgaaatagcatgtcctcc 18974518  T
Q  173 cgctcct 179  Q
    |||||||    
T  18974519 cgctcct 18974525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 35525312 - 35525189
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  35525312 caattaggcattaaaagccattacattcattcttcctcgtcacacaagtcaatcgg-ttgcccgctacattccctggggcaccttgttttggttgaggac 35525214  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  35525213 caaaatagcatgtcctcccgctcct 35525189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 24363183 - 24363059
Alignment:
Q  56 caattaggcagta-aagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| || ||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  24363183 caattaggcattagaagccattacattcattcttcctcgtcacacaagtcaatcaggttgcccactacagtccctggagcaccttcttttggttgaggac 24363084  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    ||||||||||| ||||||| |||||    
T  24363083 caaaatagcatatcctcccactcct 24363059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 26494548 - 26494672
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  26494548 caattaggcattaaaagccattacattcagtcttcctcgtcatacaagtcaatcgggttgcccgctacagtccctggagcaccttcttttggttgaggac 26494647  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  26494648 caaaatagcatgtcctcccgctcct 26494672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 29437024 - 29437147
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  29437024 caattaggcattaaaagccattacattcattcttcttcgtcacacaagtcaatcgggttgcccgctacagtccct-gggcaccttgttttggttgaggac 29437122  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    ||||||| |||||||||||||||||    
T  29437123 caaaataacatgtcctcccgctcct 29437147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 13974034 - 13974133
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 172  Q
    |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13974034 cattacattcattcttcctcgtcacacaagttaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaacaaaatagcatgtcctcc 13974133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 41803329 - 41803440
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  41803329 aaagccattacattcattcttccttgtcacacaagtcaatcgggttgcccgctacagtccttgggacaccttgttttggttgaggaccaaaataacatgt 41803428  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  41803429 cctcccgctcct 41803440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 48227614 - 48227725
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||    
T  48227614 aaagccattacattcattcttcctcgtcacacaaatcaatcgggttgcccgctacagtccctgcggtaccttgttttggttgaggaccaaaatagcatgt 48227713  T
Q  168 cctcccgctcct 179  Q
    |||| |||||||    
T  48227714 cctctcgctcct 48227725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 49925547 - 49925441
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 172  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||| ||||||||||    
T  49925547 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctaaggcaccttgttttggttgaggaccgaaataacatgtcctcc 49925448  T
Q  173 cgctcct 179  Q
    |||||||    
T  49925447 cgctcct 49925441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 51270916 - 51271017
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51270916 cattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 51271015  T
Q  178 ct 179  Q
    ||    
T  51271016 ct 51271017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 49428429 - 49428553
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||||||    
T  49428429 caattaggcattaaaagccattatattcattcttcctcgtcacacaaatcaaccgggttgcccactacagtccctgcggtaccttgttttggttgaggac 49428528  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  49428529 cgaaatagcatgtcctcccgctcct 49428553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 36910984 - 36911094
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||||| ||| |||||||||||||| || |||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36910984 aaagtctttatattcattcttcctcgtcgcacaagtcaaccgggttgccg-ctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 36911082  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  36911083 cctcccgctcct 36911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 49397736 - 49397858
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| || |||    
T  49397736 caattaggcattaaaagccattacattcattcttcatcgtcacacaagtcaatcgggttgcccgctacagtccttggggcaccgtgttttggtcgatgac 49397835  T
Q  155 caaaatagcatgtcctcccgctc 177  Q
    |||||||| ||||||||||||||    
T  49397836 caaaatagtatgtcctcccgctc 49397858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 6436849 - 6436934
Alignment:
Q  94 tcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6436849 tcacacaagtcaatcgggttgcccgctacaatccctggggcaccatgttttggttgaggaccaaaatagcatgtcctcccgctcct 6436934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 13634535 - 13634414
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  13634535 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 13634436  T
Q  155 caaaatagcatgtcctcccgct 176  Q
    | ||||||||||||||||||||    
T  13634435 cgaaatagcatgtcctcccgct 13634414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 29761273 - 29761172
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||| ||||||||| |||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29761273 cattcattcatcctcgtcacacaagccaatcgggattcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 29761174  T
Q  178 ct 179  Q
    ||    
T  29761173 ct 29761172  T

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Target: chr1; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 27485826 - 27485715
Alignment:
Q  67 taaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatg 166  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||||  || ||||||||| || |||||||||||||||||||||||||||||||||||    
T  27485826 taaagccattacattcattcatcctcgtcacacaagtcaatcgggttttccgctacagtcc-tgcggcaccttgttttggttgaggaccaaaatagcatg 27485728  T
Q  167 tcctcccgctcct 179  Q
    |||||| ||||||    
T  27485727 tcctcctgctcct 27485715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 23343637 - 23343731
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | ||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  23343637 tcttcctcatcacacaagtcaattgggttgtcctcgacaatccctggggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcct 23343731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 35585992 - 35585898
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | ||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  35585992 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 35585898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 37779266 - 37779360
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | ||||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||    
T  37779266 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccactcct 37779360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 13284565 - 13284674
Alignment:
Q  73 cattacattcattc---ttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcc 169  Q
    ||||||||||||||   ||||||||||||||| ||||||||||||||| ||||||||||| |||||| |  ||||  |||||||||||||||||||||||    
T  13284565 cattacattcattcatcttcctcatcacacaaatcaatcgggttgcccgctacagtcccttgggcacttgcttttcattgaggaccaaaatagcatgtcc 13284664  T
Q  170 tcccgctcct 179  Q
    || |||||||    
T  13284665 tctcgctcct 13284674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 15355874 - 15355780
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | | ||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||    
T  15355874 tcttcctcatcacacaagtcaattgggttgtcctcgatagtccctggggtacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 15355780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 17685419 - 17685325
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| ||||||  | | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  17685419 tcttcctcatcacacaagtcaattgggttgtactcgacagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 17685325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 49260769 - 49260677
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||||||||||||||||| |||||| || | ||||||||||||| ||||  |||||| ||||||||||||||||||||||| ||||||    
T  49260769 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggggtacctgcttttggctgaggaccaaaatagcatgtccttccgctc 49260677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 38044294 - 38044200
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||| |||||| |||||| |  | |||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||    
T  38044294 tcttcctcatcacacaggtcaattgggttgtcgtcgacagtccctgaggcacctgcttttggttgaggacaaaaatagcatgtcctcccgctcct 38044200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 39856333 - 39856239
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||  |  | ||||||||||||||||||  |||||| ||||||||||||||||||||||||| ||||||    
T  39856333 tcttcctcatcacacaagtcaattgggttttcttcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcctgctcct 39856239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 12790351 - 12790266
Alignment:
Q  94 tcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||| ||||||||||| || | ||||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||    
T  12790351 tcacacaaggcaatcgggttgtcctcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccactcct 12790266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 24269457 - 24269363
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| | | || || | ||||||||| ||||||||  ||||||  |||||||||||||||||||||||||||||||    
T  24269457 tcttcctcatcacacaagtcaattgagctgtcctcgacagtccctagggcacctgcttttggccgaggaccaaaatagcatgtcctcccgctcct 24269363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 35186121 - 35186215
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||| |||||||||||| |||||| || | |||||||||||||||| |  |||||| |||| ||||||||||||||| |||||||||||    
T  35186121 tcttcctcatgacacaagtcaattgggttgtcctcgacagtccctggggcacttgcttttggctgagaaccaaaatagcatgttctcccgctcct 35186215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 26634249 - 26634200
Alignment:
Q  130 ggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26634249 ggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 26634200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 44336970 - 44336913
Alignment:
Q  119 ctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgct 176  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44336970 ctacagtccctgcggcaccttgatttggttgaggaccaaaatagcatgtcctcccgct 44336913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 14172802 - 14172752
Alignment:
Q  129 tggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14172802 tggggcaccttcttttggttgaggaccaaaatagcatgtcctcccgctcct 14172752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 31451543 - 31451454
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccg 174  Q
    |||||||  |||||||||||||| |||||| || | |||||||| ||||||| |  ||||||||||||||||||||||||||||| ||||    
T  31451543 tcttccttgtcacacaagtcaattgggttgtcctcaacagtccccggggcacttgcttttggttgaggaccaaaatagcatgtccacccg 31451454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 40532458 - 40532373
Alignment:
Q  94 tcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||| |||| || | || ||||||| |||||||  |||||| ||||||| ||||||||||||||||||||||||    
T  40532458 tcacacaagtcaatcgagttgtcctcgacggtccctgaggcacctgcttttggctgaggacaaaaatagcatgtcctcccgctcct 40532373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 14771861 - 14771767
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||||||||||| |||||  || | | | ||| ||||||||||  ||||||||||| ||||||||| |||||||||||||||||    
T  14771861 tcttcctcgtcacacaagtcaattgggttatcctcgatattccttggggcacctgcttttggttgagaaccaaaatatcatgtcctcccgctcct 14771767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 16531280 - 16531186
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||  || ||||| |||||| || | ||||||| ||||||||||  ||||||||||||| ||||||||||||||||||| |||||    
T  16531280 tcttcctcgtcactgaactcaattgggttgtcctcgacagtccttggggcacctgcttttggttgaggatcaaaatagcatgtcctcccactcct 16531186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 46141846 - 46141885
Alignment:
Q  179 taactgccgaaaattggttataagaacataacagaacaaa 218  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  46141846 taactgccgaaaattggttataagaacagaacataacaaa 46141885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 18975129 - 18975095
Alignment:
Q  179 taactgccgaaaattggttataagaacataacaga 213  Q
    |||||||||||||||||||||||||||| ||||||    
T  18975129 taactgccgaaaattggttataagaacagaacaga 18975095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 49398478 - 49398444
Alignment:
Q  179 taactgccgaaaattggttataagaacataacaga 213  Q
    ||||||||||||||| |||||||||||||||||||    
T  49398478 taactgccgaaaatttgttataagaacataacaga 49398444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 28167883 - 28168007
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28167883 caattaggcattaaaagccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggac 28167982  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  28167983 caaaatagcatgtcctcccgctcct 28168007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 42604549 - 42604655
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 172  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  42604549 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccactggagtccctggggcaccttgttttggttgaggatcgaaatagcatgtcctcc 42604648  T
Q  173 cgctcct 179  Q
    |||||||    
T  42604649 cgctcct 42604655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 18439418 - 18439294
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||||| |||||||||||||| ||||| || |||||| ||||||||||||||||||||||||    
T  18439418 caattaggcattaaaagccattacattcattcttcctcgtcacaaaagtcaatcgggtttcccacaactgtccctagggcaccttgttttggttgaggac 18439319  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  18439318 caaaatagcatgtcctcccgctcct 18439294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 41276155 - 41276279
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | || ||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  41276155 caattaggcattaaaagccactacattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctgcggcaccttgttttggttgaggac 41276254  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  41276255 caaaatagcatgtcctcccgctcct 41276279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 41856099 - 41855993
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 172  Q
    |||||||||||||||||||  |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  41856099 cattacattcattcttccttgtcacacaaatcaatcgggttgcccgctacagtccctggggcaccttgttttggttaagaaccaaaatagcatgtcctcc 41856000  T
Q  173 cgctcct 179  Q
    |||||||    
T  41855999 cgctcct 41855993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 484493 - 484369
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  484493 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 484394  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  484393 caaaatagcatgtcctcccgctcct 484369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 40703459 - 40703557
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 171  Q
    ||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  40703459 cattacattaattcttcctcgtcacacaagtcaatcgggttgcacactacagtccctggggcaccttgttttggttgaggatcgaaatagcatgtcctc 40703557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 41017089 - 41016967
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| ||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  41017089 caattaggcattaaaagtcattacattcattcttcttcgtcacacaaatcaatcgggttgcccgctacagtccctgtggtaccttgttttggttgaggac 41016990  T
Q  155 caaaatagcatgtcctcccgctc 177  Q
    | |||||||||||||||| ||||    
T  41016989 cgaaatagcatgtcctcctgctc 41016967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 24862426 - 24862550
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||| ||||| ||||||||||||| |||||| ||| |||||||||||  |||||||||||||||||||||||    
T  24862426 caattaggcattaaaagccattacattcattcatcctcgtcacacaagtcaaacgggtttcccgctacagtccctacggcaccttgttttggttgaggac 24862525  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||| |||||    
T  24862526 caaaatagcatgtcctcccactcct 24862550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 22550173 - 22550270
Alignment:
Q  82 cattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||| ||||| |||||||||||||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22550173 cattcatcctcgtcacacaagtcaatcgggtttcccgctactgtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 22550270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 15031560 - 15031436
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  15031560 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 15031461  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | ||||||||| |||||||||||||    
T  15031460 cgaaatagcatatcctcccgctcct 15031436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 45065757 - 45065881
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||||||||| |||||||| |||||||| ||| || ||||||||| || || ||||||||||||||||||||    
T  45065757 caattaggcattaaaagtcattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccatgcggtaccttgttttggttgaggac 45065856  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||| ||||||||    
T  45065857 cgaaatagcatgtccttccgctcct 45065881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 44051535 - 44051636
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||| |||||||||||||||||||| ||| |||||||||||  |||||| | ||||| |||||||||||||||||||||||||||||||    
T  44051535 cattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctacggcaccctcttttgattgaggaccaaaatagcatgtcctcccgctc 44051634  T
Q  178 ct 179  Q
    ||    
T  44051635 ct 44051636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 42168026 - 42167932
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | |||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  42168026 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccccggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 42167932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 38032994 - 38032900
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | |||||||| ||| |||||  |||||| ||||||||||||||||||||||||||||||||    
T  38032994 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccccgggacacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 38032900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 26487576 - 26487670
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||| |||||||||||| |||||| |    ||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  26487576 tcttcctcatgacacaagtcaattgggttgtcattgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 26487670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 19241738 - 19241653
Alignment:
Q  94 tcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||| ||   ||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||||||||    
T  19241738 tcacacaagtcaatcgggttgtccttgacagtccctggggcaactgcttttgggtgaggacaaaaatagtatgtcctcccgctcct 19241653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 19314922 - 19314837
Alignment:
Q  94 tcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||| ||   ||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||||||||||    
T  19314922 tcacacaagtcaatcgggttgtccttgacagtccctggggcaactgcttttgggtgaggacaaaaatagtatgtcctcccgctcct 19314837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 18438698 - 18438732
Alignment:
Q  179 taactgccgaaaattggttataagaacataacaga 213  Q
    |||||||||||||||||||||||||||||||||||    
T  18438698 taactgccgaaaattggttataagaacataacaga 18438732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 34683047 - 34682923
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||    
T  34683047 caattaggcattaaaagccattacattcattcttcctcgtcacacaagtcaatcgagttgcccgctacagtccctggggaaccttgttttggttgaggac 34682948  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  34682947 caaaatagcatgtcctcccgctcct 34682923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 20199451 - 20199553
Alignment:
Q  77 acattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgct 176  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20199451 acattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcactttgttttggttgaggaccaaaatagcatgtcctcccgct 20199550  T
Q  177 cct 179  Q
    |||    
T  20199551 cct 20199553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 18309349 - 18309473
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  18309349 caattaggcattaaaagccattacattcattcttcctcgtcacacaatgcaatcgggttgcccgctacagtcccttgggcaccttgttttggttgaggac 18309448  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  18309449 caaaatagcatgtcctcccgctcct 18309473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 25499170 - 25499294
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  25499170 caattaggcattaaaagccattacattcattcatcctcgtcacacaagtcaatcgggttgcccgctacagtccttggggcaccttgttttggttgaggac 25499269  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||||||||||||||    
T  25499270 caaaatagtatgtcctcccgctcct 25499294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 3602431 - 3602554
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||| |||||||||||||||||||||    
T  3602431 caattaggcattaaaagccattacattcattcttcctcgtcacacaagtcaatcggattgtccgctacagtccctggg-caccttgttttggttgaggac 3602529  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  3602530 caaaatagcatgtcctcccgctcct 3602554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 35566360 - 35566483
Alignment:
Q  56 caattaggcagtaa-agtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| ||| || ||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  35566360 caattaggcattaagagccattacattcaatcttcctcgtcacacaagtcaatcgggttggccgctacagtccctgaggcaccttgttttggttgaggac 35566459  T
Q  155 caaaatagcatgtcctcccgctcc 178  Q
    ||||||||||||||||| ||||||    
T  35566460 caaaatagcatgtcctcacgctcc 35566483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 11347770 - 11347894
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||| ||||||||||||||| | |||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  11347770 caattaggcattaaaagtcattgcattcattcttcctcgtaacacaaatcaatcgggttgcccgctacagtccctgcggtaccttgttttggttgaggac 11347869  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  11347870 cgaaatagcatgtcctcccgctcct 11347894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 1399421 - 1399297
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||||||||||||| |||||||  | ||||| ||||||||||||||||||||| |||||||     
T  1399421 caattaggcattaaaagccattacattcattcttcctcgtcacacaagtcaaccgggttgttcgctacaatccctggggcaccttgttttgattgaggat 1399322  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  1399321 caaaatagcatgtcctcccgctcct 1399297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 11028417 - 11028541
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  11028417 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 11028516  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  11028517 cgaaatagcatgtcctcccgctcct 11028541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 8538959 - 8539070
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||  || ||||||||||||||||||||| |||||||||||    
T  8538959 aaagccattacattcattcttcctcgtcacacaaatcaatcgggttgcccgctacagtccctacggtaccttgttttggttgaggaccgaaatagcatgt 8539058  T
Q  168 cctcccgctcct 179  Q
    ||||| ||||||    
T  8539059 cctcctgctcct 8539070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 8575381 - 8575257
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || ||| |||||||| || ||||||||||||||||||||    
T  8575381 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctatagtccctgcggtaccttgttttggttgaggac 8575282  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  8575281 cgaaatagcatgtcctcccgctcct 8575257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 27660617 - 27660493
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||||| ||| |||||||| |||||||| ||| ||  ||||||||||| || ||||||||||||||||||||    
T  27660617 caattaggcattaaaagtcattacattcattctttctcgtcacacaaatcaatcggcttgtccgatacagtccctgcggtaccttgttttggttgaggac 27660518  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  27660517 cgaaatagcatgtcctcccgctcct 27660493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 38855124 - 38855248
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  38855124 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 38855223  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | ||||| |||||||||||||||||    
T  38855224 cgaaataacatgtcctcccgctcct 38855248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 35927180 - 35927076
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 172  Q
    |||||||||||||||||||  ||||||||| |||||||||| ||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35927180 cattacattcattcttcctggtcacacaagccaatcgggtttcccgcta--gtccctggggcaccttcttttggttgaggaccaaaatagcatgtcctcc 35927083  T
Q  173 cgctcct 179  Q
    |||||||    
T  35927082 cgctcct 35927076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 19035915 - 19035791
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| || || || ||| || |||||||||||| || ||||||||||||||||||||    
T  19035915 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcgattggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 19035816  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  19035815 cgaaatagcatgtcctcccgctcct 19035791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 6457 - 6346
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| |||||||||||||||||||| |||||||| ||||| || ||  || |||||||||||| || ||||||||||||||||||||| |||||||||||    
T  6457 aaagccattacattcattcttcctcgtcacacaaatcaataggcttaaccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgt 6358  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  6357 cctcccgctcct 6346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 7484582 - 7484488
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||  || | ||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  7484582 tcttcctcatcacacaagtcaattgggttatcctcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 7484488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 30710569 - 30710693
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| ||||||||||| |||||||||| |||||||| ||||| || ||| || ||||||||||||  | ||||||||||||| ||||||    
T  30710569 caattaggcattaaaagtcattacatttattcttcctcgtcacacaaatcaattggcttgtccgctacagtccctgcagtaccttgttttggtcgaggac 30710668  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | ||||| ||||||||| |||||||    
T  30710669 cgaaataacatgtcctctcgctcct 30710693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 1972505 - 1972591
Alignment:
Q  93 atcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||| || ||| || | ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  1972505 atcacacaagtcaattggtttgtcctcgacagtccctggggcacctgcttttgcttgaggaccaaaatagcatgtcctcccgctcct 1972591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 6792536 - 6792442
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||| |||||||||||||||||| |||||| || | ||||||||| ||||| ||  |||||| ||||||||||||||||||||||||||||||||    
T  6792536 tcttgctcatcacacaagtcaattgggttgtcctcgacagtccctagggcatctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 6792442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 1695937 - 1696022
Alignment:
Q  94 tcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||| || | ||||||| ||||||||||  |||||| ||||| ||||||||||||||||||||||||||    
T  1695937 tcacacaagtcaatcgggttgtcctcgacagtccttggggcacctgcttttggctgagggccaaaatagcatgtcctcccgctcct 1696022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 7400831 - 7400925
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||||||||||| |||||| || | ||||||| || |||||||  ||||||||||||||| ||||| |||||||| ||||||||    
T  7400831 tcttcctcgtcacacaagtcaattgggttgtcctcgacagtccttgaggcacctgattttggttgaggaccgaaataacatgtccttccgctcct 7400925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 36349383 - 36349301
Alignment:
Q  94 tcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||| ||||||||||||||| || | ||||||||||| ||||||  |||||| |||||||||||| |||||||||||||||||    
T  36349383 tcacataagtcaatcgggttgtcctcgacagtccctggagcacctgcttttggctgaggaccaaaa-agcatgtcctcccgctc 36349301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 4723178 - 4723086
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||| |||||||| |||||| || | |||| || |||||| |||  |||||| ||||||||||||||||||||||||||||||||    
T  4723178 tcttcctcatcaca-aagtcaattgggttgtcctcgacag-ccttggggcgcctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 4723086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 31239140 - 31239219
Alignment:
Q  100 aagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||| || | ||||||||| |||||| |  |||||||||||||||||||||||||||||| || |||||    
T  31239140 aagtcaattgggttgtcctccacagtccctagggcacgtgcttttggttgaggaccaaaatagcatgtccttccactcct 31239219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 18310056 - 18310022
Alignment:
Q  179 taactgccgaaaattggttataagaacataacaga 213  Q
    |||||||||||||||||||||||||||||||||||    
T  18310056 taactgccgaaaattggttataagaacataacaga 18310022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 10978414 - 10978504
Alignment:
Q  89 cctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||| ||||| || ||||| |||||| || |  |||| ||||||| ||||  ||||||||||||||||||||| || ||||| ||||||||    
T  10978414 cctcgtcacaaaattcaattgggttgtcctcgtcagttcctggggaacctgcttttggttgaggaccaaaataacaagtccttccgctcct 10978504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 34152403 - 34152279
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||    
T  34152403 caattaggcattaaaagccattacattcattcttcctcgtcacacaagtcaaccgggttgcccgctacagtccctggggcaccttgatttggttgaggac 34152304  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  34152303 caaaatagcatgtcctcccgctcct 34152279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 56140004 - 56140107
Alignment:
Q  76 tacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgc 175  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56140004 tacattcattcatcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgc 56140103  T
Q  176 tcct 179  Q
    ||||    
T  56140104 tcct 56140107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 956571 - 956447
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||||||||| ||||||||| ||| || ||||||  ||||||||||||||||||||||||||||||||||||    
T  956571 caattaggcattaaaagtcattacattcattcttcctcgtcacacaagccaaacgagttgcctgctacagtccctggggcaccttgttttggttgaggac 956472  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  956471 caaaatagcatgtcctcccgctcct 956447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 44559444 - 44559320
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| ||||||||||||||||| |||| ||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||||    
T  44559444 caattaggcattaaaagtcattacattcattctgcctcgtcacacaagtcaaacgggttgcccgctacagtctctggggcaccttgatttggttgaggac 44559345  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  44559344 caaaatagcatgtcctcccgctcct 44559320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 49572190 - 49572314
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||    
T  49572190 caattaggcattaaaagtcattacattcattcttcctcgtcacacaagtcaatcgggttgcacactacaatccctatggcaccttgttttggttgaggac 49572289  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||| ||||||||||    
T  49572290 caaaatagcatgtcatcccgctcct 49572314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 51427306 - 51427194
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggacc-aaaatagcatg 166  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||||||||||    
T  51427306 aaagccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctatagtccctggggcgccttgttttggttgaggaccaaaaatagcatg 51427207  T
Q  167 tcctcccgctcct 179  Q
    |||||||||||||    
T  51427206 tcctcccgctcct 51427194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 37867553 - 37867664
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| ||||||||||||| |||||| |||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  37867553 aaagccattacattcattattcctcgtcacacaagtcaattgggtcgcccgctacagtccctggggcaccttgtttttgttgaggaccaaaataacatgt 37867652  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  37867653 cctcccgctcct 37867664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 6281624 - 6281518
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 172  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  6281624 cattatattcattcttcctcgtcacacaagtcaatcgggttgcccgctaaagtccctggggcaccttgttttgattgaggatcaaaatagcatgtcctcc 6281525  T
Q  173 cgctcct 179  Q
     ||||||    
T  6281524 tgctcct 6281518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 34528914 - 34528813
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||| |||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34528914 cattcattcatcctcgtcacacaagtcaatcgggtttcccgctacaatccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 34528815  T
Q  178 ct 179  Q
    ||    
T  34528814 ct 34528813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 39589872 - 39589973
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||| |||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  39589872 cattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctacggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 39589971  T
Q  178 ct 179  Q
    ||    
T  39589972 ct 39589973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 6176554 - 6176430
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  6176554 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 6176455  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  6176454 cgaaatagcatgtcctcccgctcct 6176430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 9490555 - 9490679
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | || ||||| ||||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  9490555 caattaggcattaaaagccactacatccattcatcctcatcagacaagtcaatcgggttgcccgctatagtccctggggcaccttgttttggctgaggac 9490654  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||| ||||||    
T  9490655 caaaatagcatgtcctccagctcct 9490679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 21016416 - 21016292
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  21016416 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 21016317  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  21016316 cgaaatagcatgtcctcccgctcct 21016292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 49095713 - 49095837
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  49095713 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 49095812  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  49095813 cgaaatagcatgtcctcccgctcct 49095837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 1043836 - 1043937
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| ||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||    
T  1043836 cattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgttctctcgctc 1043935  T
Q  178 ct 179  Q
    ||    
T  1043936 ct 1043937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 40353015 - 40352891
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||| ||| || ||||||||||||||||||||    
T  40353015 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtcgctgcggtaccttgttttggttgaggac 40352916  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  40352915 cgaaatagcatgtcctcccgctcct 40352891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 41794041 - 41793917
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| || || || ||| || |||||||||||| || ||||||||||||||||||||    
T  41794041 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcgattggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 41793942  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  41793941 caaaatagcatgtcctcccgctcct 41793917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 49422858 - 49422751
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| |||||||||||||||||||| |||||||||||    ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  49422858 aaagccattacattcattcttcctcgtcacacaagtc----gggttgcccgctaaagtccttggggcaccttgttttggttgaggaccaaaatagcatgt 49422763  T
Q  168 cctcccgctcct 179  Q
    |||||| |||||    
T  49422762 cctcccactcct 49422751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 55797711 - 55797835
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| ||||| || ||| || ||||||||| || || ||||||||||||||||||||    
T  55797711 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaattggcttgtccgctacagtccatgcggtaccttgttttggttgaggac 55797810  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  55797811 cgaaatagcatgtcctcccgctcct 55797835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 4784430 - 4784336
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||||| || |||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||    
T  4784430 tcttcctcgtcacacaggttaatcaggttgcccgctacagtccctggggcacattcttttggttgaggaccaaaatagcatgtccccccgctcct 4784336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 36775572 - 36775478
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | || |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  36775572 tcttcctcatcacacaagtcaattgggttgtcctcgacggtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 36775478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 2774140 - 2774233
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | |||||||| |||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  2774140 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccc-ggggcacctgcttttggttgaagaccaaaatagcatgtcctcccgctcct 2774233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 21170599 - 21170693
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | |||||||| |||||||||  |||||| ||||||||||||||||||||||| ||||||||    
T  21170599 tcttcctcatcacacaagtcaattgggttgtcctcgacagtcccgggggcacctgcttttggctgaggaccaaaatagcatgtccttccgctcct 21170693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 42887399 - 42887493
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||||| || ||||||||| ||| ||||||||  ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  42887399 tcttcctcgtcacacaggttaatcgggtttcccgctacagtcattggggcaccttcttttggttgaggaccaaaataacatgtcctcccgctcct 42887493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 49791019 - 49790925
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| ||||||  | | ||||||||||||||||||  |||||| |||||||||||||| |||||||||||||||||    
T  49791019 tcttcctcatcacacaagtcaattgggttgttctcgacagtccctggggcacctgcttttggctgaggaccaaaatatcatgtcctcccgctcct 49790925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 51026878 - 51026784
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| ||   ||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  51026878 tcttcctcatcacacaagtcaattgggttgtccttgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcatcccgctcct 51026784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 4910723 - 4910631
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    |||||||| |||||||||||||| |||||| || | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||    
T  4910723 tcttcctcgtcacacaagtcaattgggttgtcctcgacagtccctagggcacctgcttttggatgaggaccaaaatagcatgtcctcccgctc 4910631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 21411066 - 21410975
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgct 176  Q
    |||||||| |||||||||||||| |||||| || |  ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  21411066 tcttcctcgtcacacaagtcaattgggttgtcctcgccagtccctgtggcacctgcttttggttgaggaccaaaatagcatgtcctcccgct 21410975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 49816494 - 49816409
Alignment:
Q  94 tcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||| || | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||| ||||||    
T  49816494 tcacacaagtcaatcgggttgtcctcgacagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctccagctcct 49816409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 21412380 - 21412471
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgct 176  Q
    |||||||| |||||||||||||| |||||| || |  ||||||| | |||||||  ||||||||||||||||||||||||||||||||||||    
T  21412380 tcttcctcgtcacacaagtcaattgggttgtcctcgccagtcccagaggcacctgcttttggttgaggaccaaaatagcatgtcctcccgct 21412471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 43888571 - 43888486
Alignment:
Q  94 tcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||| ||| ||   ||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||    
T  43888571 tcacacaagtcaatcggattgtccttgacagtccctggggcacctgcttttggctgagggccaaaatagcatgtcctcccgctcct 43888486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 9718377 - 9718470
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||| ||| |||||||||||||| |||||| || | ||||||||||| |||||| | ||||| |||||||||||||||||||||||||| |||||    
T  9718377 tctttctcgtcacacaagtcaattgggttgtcctcgacagtccctggagcacct-gctttggctgaggaccaaaatagcatgtcctcccactcct 9718470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 25145652 - 25145746
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||| |||||||| |||||| || | ||||||||||| ||||||  ||||||||||||||| ||||| |||||||| ||||||||    
T  25145652 tcttcctcgtcacataagtcaattgggttgtcctcgacagtccctggcgcacctgcttttggttgaggaccgaaataacatgtccttccgctcct 25145746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 45940661 - 45940755
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||| ||||||||||||||||| | |||| || | |||||| || ||||||||  |||||| |||||||| |||||||||||||||||||||||    
T  45940661 tcttcgtcatcacacaagtcaattgagttgtcctcgacagtctctagggcacctgcttttggctgaggacccaaatagcatgtcctcccgctcct 45940755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 24076226 - 24076339
Alignment:
Q  69 aagtcattacattcattc---ttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcat 165  Q
    ||||||||||||||| ||   |||||| ||||||||| |||| |||||| || | | ||| ||||||||||||  ||||||||||||||| ||||| ||     
T  24076226 aagtcattacattcaatcatcttcctcgtcacacaagacaattgggttgtcctcgagagtgcctggggcacctgcttttggttgaggaccgaaataacaa 24076325  T
Q  166 gtcctcccgctcct 179  Q
    ||||| ||||||||    
T  24076326 gtccttccgctcct 24076339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 17292805 - 17292881
Alignment:
Q  103 tcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||| |||||| || | ||||||  ||||||||||  |||| ||||||||||||||||||||||||||| ||||||    
T  17292805 tcaattgggttgtcctcgacagtctttggggcacctgctttttgttgaggaccaaaatagcatgtcctcctgctcct 17292881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 209
Target Start/End: Complemental strand, 37959729 - 37959699
Alignment:
Q  179 taactgccgaaaattggttataagaacataa 209  Q
    |||||||||||||||||||||||||||||||    
T  37959729 taactgccgaaaattggttataagaacataa 37959699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 2429580 - 2429691
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2429580 aaagccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctatagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 2429679  T
Q  168 cctcccgctcct 179  Q
    | ||||||||||    
T  2429680 cttcccgctcct 2429691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 55268180 - 55268074
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 172  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  55268180 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccactagagtccctggggcaccttgttttggttcaggaccgaaatagcatgtcctcc 55268081  T
Q  173 cgctcct 179  Q
    |||||||    
T  55268080 cgctcct 55268074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 45099588 - 45099466
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  45099588 caattaggcattaaaagccattacattcattcttcctcgtcacaaaagtcaatcgggttgcccgctacagtccctggtgcaccttgttttggttgaggac 45099489  T
Q  155 caaaatagcatgtcctcccgctc 177  Q
    ||||||| |||||||||||||||    
T  45099488 caaaataacatgtcctcccgctc 45099466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 55206041 - 55205936
Alignment:
Q  73 cattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 172  Q
    |||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55206041 cattacattcat-cttcctcgtcacacaagtcaatcaggttgcccactacagtccctggggcaccttgttttggttgaggaccgaaatagcatgtcctcc 55205943  T
Q  173 cgctcct 179  Q
    |||||||    
T  55205942 cgctcct 55205936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 13895023 - 13894900
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||  |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  13895023 caattaggcattaaaagccattacattcattcttccttgtcacacaagtcaatcgggttgccc-ctacaatccctggggcaccttgtttttgttgaggac 13894925  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  13894924 caaaatagcatgtcctcccgctcct 13894900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 41579008 - 41579132
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||||||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||    
T  41579008 caattaggcattaaaagccattacattcattcttcctcgtcacacaagtcaatcaggttgcccgctatagtcactggggcaccttgttttggttgaggac 41579107  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||| ||||||||||    
T  41579108 caaaatagcatgtcttcccgctcct 41579132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 43570965 - 43571089
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||    
T  43570965 caattaggcattaaaagccatcacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctgaggcaccttgatttggtcgaggac 43571064  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  43571065 caaaatagcatgtcctcccgctcct 43571089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 34692408 - 34692297
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  34692408 aaagtcattacattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccccgcggcaccttgttttggttgaggaccaaagtagcatgt 34692309  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  34692308 cctcccgctcct 34692297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 52568545 - 52568434
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| |||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  52568545 aaagccattacattcattcttccttgtcacacaagtcaatcgtgttgcccactacagtccctggggcaccttgttttggttgatgatcaaaatagcatgt 52568446  T
Q  168 cctcccgctcct 179  Q
     |||||||||||    
T  52568445 gctcccgctcct 52568434  T

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Target: chr3; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 7247141 - 7247266
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagt-ccctggggcaccttgttttggttgagga 153  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||    
T  7247141 caattaggcattaaatgccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctatatttccctggggcaccttgttttggttgagga 7247240  T
Q  154 ccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||| |||||||    
T  7247241 ccaaaatagcatgtcctctcgctcct 7247266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 49139291 - 49139167
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  49139291 caattaggcattaaaagtcattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 49139192  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  49139191 cgaaatagcatgtcctcccgctcct 49139167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 46345724 - 46345603
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||||    
T  46345724 caattaggcattaaaagccattacattcattattcctcgtcacacaagtcaatcgagttgcccgctacagtccatggggcaccttgtttttgttgaggac 46345625  T
Q  155 caaaatagcatgtcctcccgct 176  Q
    | ||||||||||||||||||||    
T  46345624 cgaaatagcatgtcctcccgct 46345603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 2267722 - 2267598
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| || ||| |||||||||||| || ||||||||||||||||||||    
T  2267722 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttacccgctacagtccctgcggtaccttgttttggttgaggac 2267623  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  2267622 cgaaatagcatgtcctcccgctcct 2267598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 2646113 - 2645989
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  2646113 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 2646014  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  2646013 cgaaatagcatgtcctcccgctcct 2645989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 43478134 - 43478234
Alignment:
Q  79 attcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcc 178  Q
    |||||||| ||||| |||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  43478134 attcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctgcggcaccctgttttggttgaggaccaaaatagcatgtcctcccgctcc 43478233  T
Q  179 t 179  Q
    |    
T  43478234 t 43478234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 46405987 - 46406111
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  46405987 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 46406086  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  46406087 cgaaatagcatgtcctcccgctcct 46406111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 54391424 - 54391548
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  54391424 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggac 54391523  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  54391524 cgaaatagcatgtcctcccgctcct 54391548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 49217845 - 49217742
Alignment:
Q  76 tacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgc 175  Q
    ||||||||||| ||||| |||||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  49217845 tacattcattcatcctcgtcacacaagttaatcgggtttcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcttcccgc 49217746  T
Q  176 tcct 179  Q
    ||||    
T  49217745 tcct 49217742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 49611260 - 49611361
Alignment:
Q  78 cattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 177  Q
    ||||||||| | ||| ||||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49611260 cattcattcattctcgtcacacaagtcaatcaggtttcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 49611359  T
Q  178 ct 179  Q
    ||    
T  49611360 ct 49611361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 4003391 - 4003267
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||||||||||||||| || ||| |||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  4003391 caattaggcattaaaagccattacattcattcttcgtcgtcagacaaatcaatcgggttgcccgctacagtccctgcggtaccttgttttggttgaggac 4003292  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||| ||||||||    
T  4003291 cgaaatagcatgtccttccgctcct 4003267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 34050709 - 34050833
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||    
T  34050709 caattaggcattaaaagccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgtggtaccttgttttggttgaggac 34050808  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | ||||| |||||||||||||||||    
T  34050809 cgaaataacatgtcctcccgctcct 34050833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 51694673 - 51694549
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||| ||||| |||||||||||||| ||||| ||| |||||||||||| | ||||||||||||||| ||||     
T  51694673 caattaggcattaaaagccattacattcattcatcctcgtcacacaagtcaattgggtttcccgctacagtccctgcgacaccttgttttggtttaggaa 51694574  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||||||||||||||    
T  51694573 caaaatagcatgtcctcccgctcct 51694549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 36136010 - 36136120
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgt 167  Q
    |||| |||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||  || ||||||||||||||||||||| |||||||||||    
T  36136010 aaagccattacattcattcttcctcgtcacacaaatcaatcgggttgcccgctac-gtcccttcggtaccttgttttggttgaggaccgaaatagcatgt 36136108  T
Q  168 cctcccgctcct 179  Q
    ||||||||||||    
T  36136109 cctcccgctcct 36136120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 3494261 - 3494137
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | |||||||||||||||||||| ||||| || ||||| || ||| || ||| |||||||| || ||||||||||||||||||||    
T  3494261 caattaggcattaaaagccattacattcattcttcctcgtcacataaatcaattggcttgtccgctatagtccctgcggtaccttgttttggttgaggac 3494162  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  3494161 cgaaatagcatgtcctcccgctcct 3494137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 11378070 - 11377976
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  11378070 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 11377976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 34646310 - 34646216
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||| | || ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  34646310 tcttcctcgtcacaaaggttaatcgggttgcccgctacagtccctagggcaccttcttttggttgaggaccaaaatagcatgtcctcccactcct 34646216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 50458354 - 50458247
Alignment:
Q  73 cattacattcattc---ttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcc 169  Q
    ||||||||||||||   ||||||| ||||||||||||| |||||| || | ||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  50458354 cattacattcattcatcttcctcaccacacaagtcaattgggttgtcctcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcc 50458255  T
Q  170 tcccgctc 177  Q
    ||||||||    
T  50458254 tcccgctc 50458247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 34471150 - 34471056
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||  || | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  34471150 tcttcctcatcacacaagtcaattgggttttcctcgacagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 34471056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 44928588 - 44928682
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||| ||||| |||||| || | ||||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||    
T  44928588 tcttcctcatcacacaattcaattgggttgtcctcgacagtccctggggaacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 44928682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 51012373 - 51012281
Alignment:
Q  87 ttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||| |||||| ||   ||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  51012373 ttcctcatcacacaagtcaattgggttgtccttgacagttcctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 51012281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 49274547 - 49274641
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| | |||||||||||| |||||| || | |||||||||||| |||||  |||||| ||||||||||||||||||||||||||||||||    
T  49274547 tcttcctcgtaacacaagtcaattgggttgtcctcgacagtccctgggacacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 49274641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 51016416 - 51016501
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcct 170  Q
    ||||||||||||||||||||||| |||||| |  | ||||||| ||||||||||  |||||| |||||||||||||||||||||||    
T  51016416 tcttcctcatcacacaagtcaattgggttgtcttcgacagtccatggggcacctgcttttggctgaggaccaaaatagcatgtcct 51016501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 27096777 - 27096685
Alignment:
Q  87 ttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||| |||||||||||||| |||||| || | |||||  |||||||||||  |||||||||||  ||||||||||||||||||||||||||    
T  27096777 ttcctcgtcacacaagtcaattgggttgtcctcgacagtttctggggcacctgcttttggttgagagccaaaatagcatgtcctcccgctcct 27096685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 14632606 - 14632689
Alignment:
Q  96 acacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||||||| |||| | || | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  14632606 acacaagtcaattgggtcgtcctcgacagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcct 14632689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 20375065 - 20374972
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||| |||||||||||||||||| |  |||||| |||| ||| |  |||||||||| ||||||||||||||||||||||||||||    
T  20375065 tcttcctcgtcacataagtcaatcgggttgcccgcggcagtccttggg-cacttgcttttggttgatgaccaaaatagcatgtcctcccgctcct 20374972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 27188201 - 27188295
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||||||| ||||  | |||||||||||| ||  |  ||||  ||||||| |||||||||||||||||||||||||    
T  27188201 tcttcctcatcacacaagtcaatcgggatgcctgcgacagtccctgggacatttgcttttaattgaggagcaaaatagcatgtcctcccgctcct 27188295  T

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Target: chr3; HSP #37
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 3497887 - 3497831
Alignment:
Q  123 agtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  3497887 agtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcct 3497831  T

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Target: chr3; HSP #38
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 30193663 - 30193757
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| |  | ||||||| ||||||||||  |||||  |||||||||||| | ||||||| |||||||||    
T  30193663 tcttcctcatcacacaagtcaattgggttgtcttcgacagtccatggggcacctgtttttgactgaggaccaaaacaacatgtccacccgctcct 30193757  T

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Target: chr3; HSP #39
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 10052445 - 10052352
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||| |||||||||||||||| |||||| || | ||| ||| ||||||||||  |||||| | |||| ||| |||||||||||||||||||||    
T  10052445 tcttccgcatcacacaagtcaattgggttgtcctcgacaatccatggggcacctgcttttggctaagga-caatatagcatgtcctcccgctcct 10052352  T

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Target: chr3; HSP #40
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 24701398 - 24701353
Alignment:
Q  68 aaagtcattacattcattcttcctcatcacacaagtcaatcgggtt 113  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  24701398 aaagtcattacattcattcatcctcgtcacacaagtcaatcgggtt 24701353  T

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Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 46413378 - 46413283
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccct-ggggcaccttg-ttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | | ||||||| |||||||| || |||||| |||||| | ||||| |||||||||||||||||    
T  46413378 tcttcctcatcacacaagtcaattgggttgtcctcgatagtccctgggggcaccctgcttttggctgaggatc-aaatatcatgtcctcccgctcct 46413283  T

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Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 7247869 - 7247835
Alignment:
Q  179 taactgccgaaaattggttataagaacataacaga 213  Q
    |||||| ||||||||||||||||||||||||||||    
T  7247869 taactgtcgaaaattggttataagaacataacaga 7247835  T

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Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 50341531 - 50341437
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||  |||||||||||||| || ||| || | ||||||||| ||||||||  |||||||| ||||   ||||| |||||||| ||||||||    
T  50341531 tcttccttgtcacacaagtcaattggattgtcctcgacagtccctagggcacctgcttttggtttaggatagaaataacatgtccttccgctcct 50341437  T

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Target: scaffold0176 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 2866 - 2990
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  2866 caattaggcattaaaagtcattacattcattcctcctcgtcacacaagtcaatcgggtttcccgctacagtccctgtggcaccttgttttggttgaggac 2965  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    |||||||||||||| ||||||||||    
T  2966 caaaatagcatgtcatcccgctcct 2990  T

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Target: scaffold0618 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 4678 - 4557
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||||    
T  4678 caattaggcattaaaagccattacattcattattcctcgtcacacaagtcaatcgagttgcccgctacagtccatggggcaccttgtttttgttgaggac 4579  T
Q  155 caaaatagcatgtcctcccgct 176  Q
    | ||||||||||||||||||||    
T  4578 cgaaatagcatgtcctcccgct 4557  T

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Target: scaffold0589 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 5420 - 5514
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    ||||||||||||||||||||||| |||||| || | |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  5420 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggggcacctggttttggctgaggaccaaaatagcatgtcctcccactcct 5514  T

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Target: scaffold0494 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 5961 - 5837
Alignment:
Q  56 caattaggcagtaaa-gtcattacattcattcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggac 154  Q
    |||||||||| |||| | ||||||  |||||||||||| |||||||| |||||||| ||| || |||||||||||| || ||||| ||||||||||||||    
T  5961 caattaggcattaaaagccattactgtcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttcttttggttgaggac 5862  T
Q  155 caaaatagcatgtcctcccgctcct 179  Q
    | |||||||||||||||||||||||    
T  5861 ctaaatagcatgtcctcccgctcct 5837  T

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Target: scaffold0859 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 1456 - 1550
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| |||||||||||||| |||||| || | |||||||||| |||||||| |||||||||||||   ||||||||||| | |||||||||    
T  1456 tcttcctcgtcacacaagtcaattgggttgtcctcgacagtccctgaggcaccttcttttggttgaggatagaaatagcatgttcacccgctcct 1550  T

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Target: scaffold0258 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 9610 - 9704
Alignment:
Q  85 tcttcctcatcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcct 179  Q
    |||||||| ||||| |||||||| |||||| || | | ||||||| |||||| |  ||||||||||||||||||||| |||||||| ||||||||    
T  9610 tcttcctcttcacataagtcaattgggttgtcctcgatagtccctagggcacatgattttggttgaggaccaaaataacatgtccttccgctcct 9704  T

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