View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19277_high_28 (Length: 223)
Name: NF19277_high_28
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 15101871 - 15102067
Alignment:
| Q |
13 |
aagaatatttgaagaggaagaagaaagaagttgataaagaaaggttaaatttctttaatctatttatttgaaaaggtatttatttctcagttcatcgaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15101871 |
aagaatatttgaagaggaagaagaaagaagttgataaagaaaggttaaatttctttaatctatttatttgaaaaagtatttatttctcagttcatcgaaa |
15101970 |
T |
|
| Q |
113 |
acaacatcctaaaagatcag-atatgaaacacctcttatataaaatagatcagaatatgaaataccccttaccaatgacttctccaattcttgtaaa |
208 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15101971 |
acaacatcctaaaagatcagaatataaaacacctcttatataaaatagatcagaatatgaaataccccttaccaatgacttctccaattcttgtaaa |
15102067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University