View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19277_high_3 (Length: 509)

Name: NF19277_high_3
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19277_high_3
NF19277_high_3
[»] chr3 (11 HSPs)
chr3 (19-500)||(1717455-1717936)
chr3 (288-500)||(1738952-1739164)
chr3 (324-500)||(1754123-1754300)
chr3 (375-500)||(1748807-1748932)
chr3 (127-208)||(46893416-46893497)
chr3 (127-181)||(13639459-13639513)
chr3 (56-208)||(54186928-54187080)
chr3 (127-208)||(29235677-29235758)
chr3 (127-195)||(48543213-48543281)
chr3 (127-196)||(20909363-20909432)
chr3 (127-159)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (126-208)||(30085447-30085529)
chr8 (127-208)||(33440574-33440655)
chr8 (127-208)||(28700583-28700664)
chr8 (127-205)||(6580862-6580939)
chr8 (129-179)||(31703822-31703872)
chr8 (144-208)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (126-211)||(51475233-51475318)
chr4 (127-195)||(31699549-31699617)
chr4 (127-191)||(37306476-37306540)
chr4 (126-203)||(6540258-6540335)
chr4 (127-181)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (127-194)||(709-776)
[»] chr5 (7 HSPs)
chr5 (127-211)||(41020248-41020332)
chr5 (127-189)||(42958487-42958549)
chr5 (127-195)||(5990589-5990657)
chr5 (127-195)||(18237206-18237274)
chr5 (127-195)||(30892150-30892218)
chr5 (127-195)||(32153763-32153831)
chr5 (110-182)||(34320913-34320985)
[»] chr1 (5 HSPs)
chr1 (127-182)||(932035-932090)
chr1 (135-208)||(11709656-11709729)
chr1 (127-208)||(19078941-19079022)
chr1 (127-208)||(19126829-19126910)
chr1 (129-195)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (126-208)||(17878710-17878792)
chr7 (127-195)||(557447-557515)
chr7 (126-182)||(47822035-47822091)
chr7 (127-208)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (129-195)||(5140042-5140108)
chr2 (135-211)||(864178-864254)
chr2 (127-195)||(6951739-6951808)
chr2 (113-206)||(16011989-16012082)
chr2 (127-195)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (127-208)||(7447636-7447716)
chr6 (128-208)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 1717936 - 1717455
Alignment:
Q  19 tatatatctaaaatttattcatatattcctgaaacagaatgttaagaacactctcttactaacacnnnnnnnaacatttaccctcgtattagatgaaatc 118  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||| ||       |||| | || ||||||||||||||||||    
T  1717936 tatatatctaaaatttattcatatattcctcaggcagaatgttaagaacactctcttactaatactttttctaacactcactctcgtattagatgaaatc 1717837  T
Q  119 catataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgtacatggc 218  Q
     ||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||| ||    
T  1717836 tatatggatctcaccactttatgtatgatccatttccaatatttgatatccacatgaatttcactaaataagaaagtggacgttagagaatgtacatagc 1717737  T
Q  219 attcctccttagacagaatgctaggaacactcttactagaactttctctaagattcactctccttatttaaaactttgttaaccaattgaattacctact 318  Q
    ||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1717736 atttctccttagacagaatgctaggaacactcttactggcactttctctaagattcactctccttatttaaaactttgttaaccaaatgaattacctact 1717637  T
Q  319 cgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtca 418  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1717636 cgaaactgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaatgagccactaggtgtca 1717537  T
Q  419 atctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc 500  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1717536 atctagatagcttgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtc 1717455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 288 - 500
Target Start/End: Complemental strand, 1739164 - 1738952
Alignment:
Q  288 aaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggagga 387  Q
    ||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  1739164 aaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggagga 1739065  T
Q  388 atagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactt 487  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  1739064 atagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactt 1738965  T
Q  488 atgtgatgatgtc 500  Q
    ||||||| |||||    
T  1738964 atgtgatcatgtc 1738952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 324 - 500
Target Start/End: Complemental strand, 1754300 - 1754123
Alignment:
Q  324 ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct 422  Q
    ||||||||||| |||| ||||||||| ||||  |||| ||  || |||||  ||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  1754300 ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct 1754201  T
Q  423 agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc 500  Q
    ||||||||| ||||| ||||||| ||| ||||||||||  |||||||||||||  |||||| |||||||||| |||||    
T  1754200 agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtc 1754123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 375 - 500
Target Start/End: Complemental strand, 1748932 - 1748807
Alignment:
Q  375 aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac 474  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||||| || ||||||||||| |||||| ||||||    
T  1748932 aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac 1748833  T
Q  475 atcccaaatacttatgtgatgatgtc 500  Q
    | |||| |  |||||||||| |||||    
T  1748832 aacccagaggcttatgtgatcatgtc 1748807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 46893416 - 46893497
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||| | |||||||||||   ||||||||||    
T  46893416 tctcaccactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagagag 46893497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 13639513 - 13639459
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 181  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||    
T  13639513 tctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttca 13639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 54186928 - 54187080
Alignment:
Q  56 aatgttaagaacactctcttactaacacnnnnnnnaacatttaccctcgtattagatgaaatccatataaatctcaccactttatgtgtgatccatttcc 155  Q
    |||| ||||||||||||||| |||||||       |||||| || ||| |||| | |||||  ||| | |||||||||| |||||||| ||||||||||     
T  54186928 aatgctaagaacactctctttctaacactctctctaacattcactctcctattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttct 54187027  T
Q  156 aatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    ||| | || || ||||||||| |||||  |||||||||||   ||||||||||    
T  54187028 aatgtgtggtacccacatgaacttcacccaataagagagtgagtgttagagag 54187080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 29235758 - 29235677
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    ||||||||||||||||  |||||||||| ||| | || ||||| ||||||||||||  |||||||||||   ||||||||||    
T  29235758 tctcaccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttagagag 29235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 48543213 - 48543281
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 195  Q
    |||||||| |||||||| | |||||||||||| | || || |||||||||||||||  |||||||||||    
T  48543213 tctcaccattttatgtggggtccatttccaatgtatgctacccacatgaatttcacccaataagagagt 48543281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 20909363 - 20909432
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagta 196  Q
    ||||||||||||||||| ||||||||| |||||  || |  |||| ||||||||||  ||||||||||||    
T  20909363 tctcaccactttatgtgggatccattttcaataggtggtgcccacctgaatttcacccaataagagagta 20909432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 54140844 - 54140812
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaata 159  Q
    ||||||||||||||||| |||||||||||||||    
T  54140844 tctcaccactttatgtgggatccatttccaata 54140812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 30085447 - 30085529
Alignment:
Q  126 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    |||||||||||||||||| ||||||||||||| || ||| |  ||||||||||||||| ||||||||||||  ||||||||||    
T  30085447 atctcaccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttagagag 30085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 33440574 - 33440655
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||| ||||||  |||||||||||  |||||||||||    
T  33440574 tctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagag 33440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 28700664 - 28700583
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    ||||||||||||||||| ||| |||||||||||| || || |||||| ||||| ||  |||||||||||   ||||||||||    
T  28700664 tctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagag 28700583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 6580939 - 6580862
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttaga 205  Q
    ||||||||||||||||| |||| ||||||||| | || || |||||||||||||||  |||||||| ||  ||||||||    
T  6580939 tctcaccactttatgtgggatc-atttccaatgtgtggtacccacatgaatttcacccaataagagggtgaatgttaga 6580862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 31703822 - 31703872
Alignment:
Q  129 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaattt 179  Q
    ||||||||||||||| |||||||||||||  | |||||||||||| |||||    
T  31703822 tcaccactttatgtgggatccatttccaaagtgtgatatccacattaattt 31703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 16895335 - 16895271
Alignment:
Q  144 tgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    |||||||||| |||||| || ||||||||||||||| | | |||||||||||   ||||||||||    
T  16895335 tgatccattttcaatatgtggtatccacatgaatttgattcaataagagagtgagtgttagagag 16895271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 51475233 - 51475318
Alignment:
Q  126 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 211  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||  ||||||||||| | |||||||||||||    
T  51475233 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaataagagagtgggtgttagagagtgt 51475318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 31699549 - 31699617
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 195  Q
    |||||||| |||||||| | |||||||||||| | ||||| |||||||||||||||  |||||||||||    
T  31699549 tctcaccattttatgtggggtccatttccaatgtatgatacccacatgaatttcacccaataagagagt 31699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 37306476 - 37306540
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataaga 191  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||||  |||||||    
T  37306476 tctcaccactttatgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaga 37306540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 6540335 - 6540258
Alignment:
Q  126 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgtta 203  Q
    ||||||||||||| |||  |||||||||||||| | ||||| ||||||  |||||||  ||||||||||| |||||||    
T  6540335 atctcaccactttgtgtaggatccatttccaatgtatgataaccacattgatttcacccaataagagagtggatgtta 6540258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 43480353 - 43480299
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 181  Q
    ||||||||||||||||| ||||||||| |||| | || || ||||||||||||||    
T  43480353 tctcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttca 43480299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 776 - 709
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagag 194  Q
    ||||||||||||||||| ||||||||| |||| | || ||||||||||||||||||| ||||||||||    
T  776 tctcaccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagag 709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 41020248 - 41020332
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 211  Q
    ||||||||||||||||| ||| |||||||||||| || || ||||||  |||||||  ||||||||||| | |||||||||||||    
T  41020248 tctcaccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtgggtgttagagagtgt 41020332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 42958549 - 42958487
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataa 189  Q
    ||||||||||||||||| ||||||||||||||   || || ||||||||||||||| ||||||    
T  42958549 tctcaccactttatgtgggatccatttccaatgcgtggtacccacatgaatttcaccaaataa 42958487  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 5990589 - 5990657
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 195  Q
    |||||||| |||||||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  5990589 tctcaccattttatgtgggatccatttccaatgtatggtacccacatgaatttcacccaataaaagagt 5990657  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 18237206 - 18237274
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 195  Q
    ||||||||||||||||| |||| |||| |||| | ||||| |||||||||||||||  ||||| |||||    
T  18237206 tctcaccactttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagt 18237274  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 30892218 - 30892150
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 195  Q
    |||||||| |||||||| |||||||||| ||| | || || ||||||||| |||||  |||||||||||    
T  30892218 tctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagt 30892150  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 32153763 - 32153831
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 195  Q
    ||||||||||||||||| |||||||||||||  | ||  |||||||||  ||||||  |||||||||||    
T  32153763 tctcaccactttatgtgggatccatttccaaagtgtgggatccacatgggtttcacccaataagagagt 32153831  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 34320913 - 34320985
Alignment:
Q  110 gatgaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 182  Q
    |||||||||||| | | ||||||||||||||||| |||| |||| |||  | || |||||||||| |||||||    
T  34320913 gatgaaatccatgtgagtctcaccactttatgtgggatctattttcaaagtatggtatccacatggatttcac 34320985  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 932090 - 932035
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 182  Q
    ||||||||||||||||| |||||||||||||| | || ||||||||||||||||||    
T  932090 tctcaccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcac 932035  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 11709656 - 11709729
Alignment:
Q  135 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    ||||||||| |||||||||||||| | || || |||||||||||||||| |||||||||||   ||||||||||    
T  11709656 ctttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagag 11709729  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 19079022 - 19078941
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19079022 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19078941  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 19126910 - 19126829
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19126910 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19126829  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 14562603 - 14562669
Alignment:
Q  129 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 195  Q
    ||||||||||||||| |||||||||||||  | || || | |||| ||||||||| |||||||||||    
T  14562603 tcaccactttatgtgggatccatttccaaagtgtggtacctacataaatttcactcaataagagagt 14562669  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 17878792 - 17878710
Alignment:
Q  126 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    |||||||||||||||||| |||| ||||| ||| | ||||| |||||||| ||||||  |||||||||||| |||||| ||||    
T  17878792 atctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagtaaatgttaaagag 17878710  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 557447 - 557515
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 195  Q
    ||||||||||||||||| |||||||||  ||| | ||||| ||||||||||||||   |||||||||||    
T  557447 tctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagt 557515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 47822091 - 47822035
Alignment:
Q  126 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 182  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||    
T  47822091 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcac 47822035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 43930030 - 43930110
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    |||||||||||||| |||||||||||| |||| | || || |||||||||||||||  ||||| |||||   ||||||||||    
T  43930030 tctcaccactttat-tgtgatccattttcaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttagagag 43930110  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 5140042 - 5140108
Alignment:
Q  129 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 195  Q
    ||||||||||||||| ||||||||| |||| | || || |||||||||||||||| |||||||||||    
T  5140042 tcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagt 5140108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 864178 - 864254
Alignment:
Q  135 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 211  Q
    ||||||||| |||||||||| ||| | || || |||||||||||||||  |||||||||||   |||||||||||||    
T  864178 ctttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagtgt 864254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 6951808 - 6951739
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaa-tttcactaaataagagagt 195  Q
    ||||||||||||||||| ||||||||| |||| | ||  | ||||||||| ||||||| |||||||||||    
T  6951808 tctcaccactttatgtgggatccattttcaatgtgtggcacccacatgaattttcactcaataagagagt 6951739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 16011989 - 16012082
Alignment:
Q  113 gaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagag 206  Q
    |||||| ||||  ||||||||||||||||| | ||| |||||||| || |  |||||||||| |||| | | ||||||| ||||| ||||||||    
T  16011989 gaaatctatatggatctcaccactttatgtttaatctatttccaaaatgtagtatccacatgtattttattcaataagaaagtaggtgttagag 16012082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 37285185 - 37285253
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 195  Q
    ||||| ||||||| ||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  37285185 tctcatcactttacgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaaagagt 37285253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 7447636 - 7447716
Alignment:
Q  127 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    ||||||||||||||||| |||||||||| ||| | || || |||||||||||||||  || |||||||| ||||||||||||    
T  7447636 tctcaccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagt-gatgttagagag 7447716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 32439586 - 32439506
Alignment:
Q  128 ctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 208  Q
    |||||| ||||||||| |||||||||||||| | || || |||||||||||||||  |||||||||||   ||||||||||    
T  32439586 ctcaccgctttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagag 32439506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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