View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_high_4 (Length: 385)
Name: NF19277_high_4
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 31662510 - 31662873
Alignment:
| Q |
1 |
ggatgtcttttatacttggtgagtcacatggttttgtttagaagagatacaatgtctacaagaaataaaccttcaacaataaactctaaattcnnnnnnn |
100 |
Q |
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| T |
31662510 |
ggatgtcttttatacttggtgagtcacatggttttgtttagaagagatacaatgtctacaagaaataaaccttcaacaataaactctaatttcaaaaaaa |
31662609 |
T |
|
| Q |
101 |
nnnnnnnntcgaaaatttgggttgggaaactagaga--atagtccaaaaatactaaattcttagcctttgatcgcctaaaattcttccttttgataaacc |
198 |
Q |
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|||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31662610 |
aaaa----tcgagaatttgggttgggaacctagagagaatattccaaaaatactaaattcttagcctttgatcgcttaaaattcttccttttgataaacc |
31662705 |
T |
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| Q |
199 |
ctagtatgtctcactcttcttcctcaaaattgtgttgaaatagcctatattatagaactagacacagacctacgcctagtgcatagtgctcaaacgccta |
298 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662706 |
ctagtttgtctcactcttcttcctcaaaattgtgttgaaatagcctatattatagaactagacacagacctacgcctagtgcatagtgctcaaacgccta |
31662805 |
T |
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| Q |
299 |
gtgcagcacccagagacacaacctcctgaaacaccaaacaagttgcgcctagcgcatgggacagaatg |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662806 |
gtgcagcacccagagacacaacctcctgaaacaccaaacaagttgcgcctagcgcatgggacagaatg |
31662873 |
T |
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