View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_low_11 (Length: 312)
Name: NF19277_low_11
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 51197492 - 51197191
Alignment:
| Q |
11 |
tgaatggcgattgaatatgctaaccggagaggttaaggagaaagatctttgtggtaacaaacttgtttatatggattttcctatgatcaatgaaaacttt |
110 |
Q |
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| T |
51197492 |
tgaatggcgattgaatatgctaaccggagaggttaaggagaaagatctttgtggtaacaaacttgtttatatggattttcctatgatcaatgaaaacttt |
51197393 |
T |
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| Q |
111 |
gttggtgttaagcatagatatgcatacacacaagtagttgatcctacaagctctaccactcaaggtaattaccagtttattctttatccagagaattgta |
210 |
Q |
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| T |
51197392 |
gttggtgttaagcatagatatgcatacacacaagtagttgatcctacaagctctaccactcaaggtaattaccagtttattctttatccagagcattgta |
51197293 |
T |
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| Q |
211 |
acatgtaattagcctttcatactttctatataaatatttataatatggttttgttcttgtgctatttagatgtgccaaaatatagaggtatagctaagct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51197292 |
acatgtaattagcctttcatactttctatataaatatttataatatggttttgttcttgtgctatttagatgtgccaaaatatagaggtatagctaagct |
51197193 |
T |
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| Q |
311 |
at |
312 |
Q |
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|| |
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| T |
51197192 |
at |
51197191 |
T |
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