View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_low_15 (Length: 284)
Name: NF19277_low_15
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_15 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 31810533 - 31810250
Alignment:
| Q |
1 |
tctgcctaactacatcatcaaggaaatcaacatctgcaccagcatcaagcaagagcttaacaatctcaaatttggatttagagccaccagcaacagcaca |
100 |
Q |
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| T |
31810533 |
tctgcctaactacttcatcaaggaaatcaacatctgcaccagcatcaagcaagagcttaacaatctcaaatttggatttagagccaccagcaacagcaca |
31810434 |
T |
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| Q |
101 |
atgtaatgcagtgacattttcactaccaattgccatgttcacattaaccatgtttgtttcaatgatatatttgaccaccctaatgcttccaaacaaagaa |
200 |
Q |
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| T |
31810433 |
atgtaatgcagtgacattttcactaccaattgccatgttcacattaaccatgtttgtttcaatgatatatttgaccaccctaatgcttccaaacaaagaa |
31810334 |
T |
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| Q |
201 |
gcaatcataaggggtgtcctcttttcataacacattttctttgatcctatttttctacagtaccaaaaccctgcctcatttaca |
284 |
Q |
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| T |
31810333 |
gcaatcataaggggtgttctcttttcataacacattttctttgatcctatttttctacagtaccaaaaccctgcctcatttaca |
31810250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 25817891 - 25817828
Alignment:
| Q |
184 |
tgcttccaaacaaagaagcaatcataaggggtgtcctcttttcataacacattttctttgatcc |
247 |
Q |
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| T |
25817891 |
tgcttccaaacaaggcagcaatcataagaggggtcctttcttcataactcatttcctttgatcc |
25817828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 35643265 - 35643158
Alignment:
| Q |
173 |
gaccaccctaatgcttccaaacaaagaagcaatcataaggggtgtcctcttttcataacacattttctttgatcctatttttctacagtaccaaaaccct |
272 |
Q |
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| T |
35643265 |
gaccactctagtgcttccaaacatggaagcaatcataagaggagtcctcttttcggattccatcttcttcgatccaattcttctaccataccaaaagcct |
35643166 |
T |
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| Q |
273 |
gcctcatt |
280 |
Q |
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| T |
35643165 |
tcctcatt |
35643158 |
T |
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