View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_low_17 (Length: 261)
Name: NF19277_low_17
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_17 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 1903063 - 1903310
Alignment:
| Q |
14 |
tactggtaggtagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaa |
113 |
Q |
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| T |
1903063 |
tactggtaggtagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaa |
1903162 |
T |
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| Q |
114 |
caccagatataacactgacactaggacatagacgccaatattaatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagca |
213 |
Q |
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| T |
1903163 |
caccatatataacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagca |
1903262 |
T |
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| Q |
214 |
cgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtg |
261 |
Q |
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| T |
1903263 |
cgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtg |
1903310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 1907296 - 1907543
Alignment:
| Q |
14 |
tactggtaggtagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaa |
113 |
Q |
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| T |
1907296 |
tactggtaggtagggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaa |
1907395 |
T |
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| Q |
114 |
caccagatataacactgacactaggacatagacgccaatattaatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagca |
213 |
Q |
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| T |
1907396 |
caccatatataacactgacactaggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagca |
1907495 |
T |
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| Q |
214 |
cgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtg |
261 |
Q |
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| T |
1907496 |
cgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtg |
1907543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 1897876 - 1897961
Alignment:
| Q |
165 |
aaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacg |
250 |
Q |
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| T |
1897876 |
aaatggaaatgattgaatttaacatgcatgtctatgtccgacaccagcacgtgccagacatcgatacatgttggacactgaacacg |
1897961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 1897627 - 1897676
Alignment:
| Q |
97 |
attgacacagtcacgaacaccagatataacactgacactaggacatagac |
146 |
Q |
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| T |
1897627 |
attgacacagtcacgaacaccagacataatactgacactagcacgtagac |
1897676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 1892137 - 1892189
Alignment:
| Q |
27 |
ggtagggttagtattatgcaaaatgagagatattatacattaaaaattaaagt |
79 |
Q |
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| T |
1892137 |
ggtaggattagtattatgcaaaatgagagacgttatactttaagaattgaagt |
1892189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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