View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_low_19 (Length: 258)
Name: NF19277_low_19
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 8468234 - 8467980
Alignment:
| Q |
1 |
tcacactcctcatgtcatctgtgtgcttccccttttaagccaaagtgaccaaaacaaaaacacattggcattctaatccaccgcca-agtcacgtcaccg |
99 |
Q |
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| T |
8468234 |
tcacactcctcatgttatctgcgcgcttccccttttaagccaaagtgaccaaaacaaaaacacagtggcattctaatccaccgccagagtcacgtcaccg |
8468135 |
T |
|
| Q |
100 |
attttttcactttccacaagtaactcttatattgacaccacgtgtacgttcttgatatctctttgccacgttggcaacctccatcactggactctaccaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8468134 |
attttttcactttccacaagtaactcttatattgacaccacgtgtacgttcttgatatctctttgccacgttggcaacctccatcactggactctaccaa |
8468035 |
T |
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| Q |
200 |
tagcaaactaattattatctaactatttaacacaagttaccgtttcatctcactc |
254 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
8468034 |
tagcaaactaattattatcttactatttaacacaagttaccgtttcatctaactc |
8467980 |
T |
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