View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19277_low_2 (Length: 680)

Name: NF19277_low_2
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19277_low_2
NF19277_low_2
[»] chr5 (8 HSPs)
chr5 (161-351)||(40811349-40811538)
chr5 (218-351)||(27756538-27756671)
chr5 (615-674)||(40811013-40811072)
chr5 (218-351)||(16309852-16309985)
chr5 (169-351)||(16308682-16308864)
chr5 (64-110)||(40811589-40811637)
chr5 (295-351)||(27755504-27755557)
chr5 (15-43)||(40811655-40811683)
[»] chr2 (10 HSPs)
chr2 (218-351)||(37394061-37394194)
chr2 (218-351)||(44464843-44464976)
chr2 (218-351)||(44421095-44421228)
chr2 (264-351)||(8803063-8803150)
chr2 (218-351)||(472893-473025)
chr2 (293-351)||(44420043-44420101)
chr2 (281-351)||(8802040-8802108)
chr2 (294-351)||(34591954-34592011)
chr2 (218-351)||(44463737-44463866)
chr2 (303-351)||(9109181-9109229)
[»] chr1 (5 HSPs)
chr1 (218-351)||(13209748-13209881)
chr1 (218-351)||(7185609-7185742)
chr1 (218-351)||(26646583-26646715)
chr1 (295-351)||(7184565-7184620)
chr1 (218-351)||(13210876-13210998)
[»] chr3 (2 HSPs)
chr3 (218-351)||(30700469-30700602)
chr3 (234-351)||(30701595-30701711)
[»] chr4 (2 HSPs)
chr4 (218-351)||(42889564-42889697)
chr4 (218-351)||(54536449-54536582)
[»] chr8 (3 HSPs)
chr8 (295-351)||(15279395-15279450)
chr8 (295-351)||(15459764-15459819)
chr8 (218-351)||(3157792-3157923)
[»] chr6 (2 HSPs)
chr6 (221-288)||(33469625-33469692)
chr6 (293-350)||(1444997-1445054)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 2e-85; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 161 - 351
Target Start/End: Complemental strand, 40811538 - 40811349
Alignment:
Q  161 ggtccatgccgtcatcttctgttacaaaatcgctcatttgtctaatggcaactgacatgtgacatggcaagtgaggcttatgcgtcgttccagatatcca 260  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40811538 ggtccatgccgtcatcttctgt--caaaatcgctcatgtgtctaatggcaactaacatgtgacatggcaagtgaggcttatgcgtcgttccagatatcca 40811441  T
Q  261 gtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattcaaaaacacgaattaacaaaa-tttcaaattaaaaa 351  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40811440 gtgacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattcaaaaacacgaattaacaaaattttcaaattaaaaa 40811349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 27756671 - 27756538
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||  ||| |||||||| || |||||||| |  ||||| ||||||||||| | |||||    
T  27756671 tgtgacatggcaagtgaggcttatgtgtcattccagatgtccagtggcaaggttatagggactaaatccaaaaacgaaaacttacagagggatgaaattc 27756572  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||||| ||| ||||| || ||||||||||    
T  27756571 aaaaacacgacttagcaaaactttaaattaaaaa 27756538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 615 - 674
Target Start/End: Complemental strand, 40811072 - 40811013
Alignment:
Q  615 ctaacagaaacaacaacaaatgcatcaaccctacaccaccaccatcatacattcatctct 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40811072 ctaacagaaacaacaacaaatgcatcaaccctacaccaccaccatcatacattcatctct 40811013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 16309985 - 16309852
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    |||||| |||||||||||||||||| ||| |||||||| || | |  |||  ||||||| || |||||||| |  ||||| ||||||||||| | |||||    
T  16309985 tgtgacgtggcaagtgaggcttatgtgtcattccagatgtcaaatggcaagattatagggactaaatccaaaaacgaaaacttacagagggatgaaattc 16309886  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||||| ||| ||||| || ||||||||||    
T  16309885 aaaaacacgacttagcaaaactttaaattaaaaa 16309852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 351
Target Start/End: Original strand, 16308682 - 16308864
Alignment:
Q  169 ccgtcatcttctgttacaaaatcgctcatttgtctaatggcaactgacatgt-gacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaa 267  Q
    |||||||| |||||||||||| |||| || ||||||| | || ||||| ||  ||| |||||||  ||||||||| |||||||||||| || | |  |||    
T  16308682 ccgtcatcatctgttacaaaaacgcttatgtgtctaacgacagctgacgtggcgacgtggcaagcaaggcttatgtgtcgttccagatgtcaaatggcaa 16308781  T
Q  268 tgttataggaaccaaatccaagattgaaaatttacagagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
     |||| |   ||||||||||| |    ||||||||||||||||| |||| ||||||| ||| ||||||||||| ||||||||||    
T  16308782 ggttacatagaccaaatccaaaaacacaaatttacagagggacgaaattaaaaaacaagaa-taacaaaattttaaattaaaaa 16308864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 40811637 - 40811589
Alignment:
Q  64 aaaatgacctttaaatttagatttaa--atatgttaatcgtccttgtaa 110  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  40811637 aaaatgacctttaaatttagatttaaatatatgttaatcgtccttgtaa 40811589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 27755504 - 27755557
Alignment:
Q  295 aaatttacagagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    ||||||||||||||||| |||||||||  ||||| ||||||||||| ||||||||||    
T  27755504 aaatttacagagggacgaaattcaaaa--acgaa-taacaaaattttaaattaaaaa 27755557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 40811683 - 40811655
Alignment:
Q  15 aaaatgcatttagtttatttgtgtgacaa 43  Q
    |||||||||||||||||||||||||||||    
T  40811683 aaaatgcatttagtttatttgtgtgacaa 40811655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 37394061 - 37394194
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    |||||| |||||||||||| ||||  |||||| ||||| |||| | |||| |||||||||||||||||||| || ||| ||||| ||||||| |||||||    
T  37394061 tgtgacgtggcaagtgaggtttataagtcgtttcagatgtccactgacaaggttataggaaccaaatccaaaatggaagatttagagagggatgcaattc 37394160  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    ||||||| ||||| ||||||||||||| ||||||    
T  37394161 aaaaacatgaatttacaaaatttcaaactaaaaa 37394194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 44464976 - 44464843
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    |||||| |||||||||||||||||| |||||||||||| ||||||  ||| |||||||| || |||||||| |  ||||| ||||||||||| | |||||    
T  44464976 tgtgacgtggcaagtgaggcttatgtgtcgttccagatgtccagtggcaaggttatagggactaaatccaaaaacgaaaacttacagagggatgaaattc 44464877  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||||| ||| ||||| || ||||||||||    
T  44464876 aaaaacacgacttagcaaaactttaaattaaaaa 44464843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 44421228 - 44421095
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||| |  ||| |||||||  ||||||||||| | | ||||| |||||||||||  | |||    
T  44421228 tgtgacatggcaactgaggcttatgtgtcgttctagatgtccaatggcaaggttatagagaccaaatccaaaacttaaaatatacagagggaccaacttc 44421129  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||||| |||||||||||| ||||||||||    
T  44421128 aaaaacacgacttaacaaaattttaaattaaaaa 44421095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 264 - 351
Target Start/End: Complemental strand, 8803150 - 8803063
Alignment:
Q  264 acaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||| |||||||| || |||||||| |  ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  8803150 acaaggttatagggactaaatccaaaaacgaaaatttacagagggacgaaattcaaaaacatgaattaacaaaatttcaaattaaaaa 8803063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 472893 - 473025
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    |||||||  |||||||||||||||| |||||||||||| |||| | | |  |||||||| |||||||| || |   ||| |||||||||||||| |||||    
T  472893 tgtgacactgcaagtgaggcttatgtgtcgttccagatgtccaatgatatggttatagggaccaaatcaaaaaacaaaagtttacagagggacgaaattc 472992  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||| || ||||||||||||||||||||||||||    
T  472993 aaaa-catgaattaacaaaatttcaaattaaaaa 473025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 44420043 - 44420101
Alignment:
Q  293 gaaaatttacagagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    ||||||||||||||||||| |||||||||||| || |||||||||||| ||||||||||    
T  44420043 gaaaatttacagagggacgaaattcaaaaacatgacttaacaaaattttaaattaaaaa 44420101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 8802040 - 8802108
Alignment:
Q  281 aaatccaagattgaaaatttacagagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||| | ||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  8802040 aaatccaaaaatgaaaatttccag-gggacgaaattcaaaaacacgaattaac-aaatttcaaattaaaaa 8802108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 34591954 - 34592011
Alignment:
Q  294 aaaatttacagagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||| ||||||||  ||||||||||||||| |||| ||||||||||||||||||    
T  34591954 aaaatttatagagggacaaaattcaaaaacacgatttaagaaaatttcaaattaaaaa 34592011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 44463737 - 44463866
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    |||||| |||||||  | |||||||||||||||||||| || | |  ||| |||| ||  ||||||||||| |  | ||||||||||||||||| |||||    
T  44463737 tgtgacgtggcaagcaaagcttatgcgtcgttccagatgtcaaatggcaaggttacagtgaccaaatccaaaaacgcaaatttacagagggacgaaattc 44463836  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||   ||| ||||||||||| ||||||||||    
T  44463837 aaaaa---gaa-taacaaaattttaaattaaaaa 44463866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 9109181 - 9109229
Alignment:
Q  303 agagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    ||||||| | |||||||||||| | ||||||||||||||||||||||||    
T  9109181 agagggaagaaattcaaaaacaaggattaacaaaatttcaaattaaaaa 9109229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 13209748 - 13209881
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||| |  ||| |||||||| ||||||||||| |  |||||| || ||||||||  |||||    
T  13209748 tgtgacatggcaactgaggcttatgtgtcgttctagatgtccaatggcaaggttatagggaccaaatccaaaaccgaaaatatatagagggaccaaattc 13209847  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||||| | |||||||||| ||||||||||    
T  13209848 aaaaacacgactaaacaaaattttaaattaaaaa 13209881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 7185742 - 7185609
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    |||||| ||||||||||| |||||| ||| |||||||| ||||||  ||| |||||||| || |||||||| |  ||||| ||||||||||| | |||||    
T  7185742 tgtgacgtggcaagtgagacttatgtgtcattccagatgtccagtggcaaggttatagggactaaatccaaaaacgaaaacttacagagggatgaaattc 7185643  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||||| ||| ||||| || ||||||||||    
T  7185642 aaaaacacgacttagcaaaactttaaattaaaaa 7185609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 26646715 - 26646583
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    ||||||||||||||||||||||||| |||||| ||| |    ||| |||| |||||| | |||||||| || |   |||||||| || |||||  ||||     
T  26646715 tgtgacatggcaagtgaggcttatgtgtcgtttcaggtgattagtgacaaggttatatggaccaaatcgaaaaacaaaaatttatagcgggacaaaattg 26646616  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||| || ||||||||||||||||||||||||||    
T  26646615 aaaa-catgaattaacaaaatttcaaattaaaaa 26646583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 7184565 - 7184620
Alignment:
Q  295 aaatttacagagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||    
T  7184565 aaatttacagagggacgaaattcaaaaacaggaa-taacaaaattttaaattaaaaa 7184620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 13210998 - 13210876
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    ||||| |||||||||||||||||||  ||||||||||||          |||||||||| |||||| |||| |  ||||||||||||||||||  |||||    
T  13210998 tgtgatatggcaagtgaggcttatgtatcgttccagata----------atgttatagggaccaaaaccaaaaacgaaaatttacagagggacaaaattc 13210909  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    | |||||  | || ||||||||| ||||||||||    
T  13210908 agaaaca-tactttacaaaattttaaattaaaaa 13210876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 30700469 - 30700602
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    ||||||||||||||||||||||||| ||| ||||| || ||||||  ||| |||||||| || |||||||| |  ||||| ||||||||||| | |||||    
T  30700469 tgtgacatggcaagtgaggcttatgtgtcattccaaatgtccagtggcaaggttatagggactaaatccaaaaacgaaaacttacagagggatgaaattc 30700568  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    ||||| |||| ||| ||||| || ||||||||||    
T  30700569 aaaaaaacgacttagcaaaactttaaattaaaaa 30700602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 30701711 - 30701595
Alignment:
Q  234 aggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattcaaaaacacgaattaac 333  Q
    ||||||||| |||||||||||| || | |  ||| |||| ||| ||||||||||| |  | ||||||||| ||||||| |||||||||||| ||| ||||    
T  30701711 aggcttatgtgtcgttccagatgtcaaatggcaaagttacagggaccaaatccaaaaacgcaaatttacaaagggacgaaattcaaaaacaggaa-taac 30701613  T
Q  334 aaaatttcaaattaaaaa 351  Q
    ||||||| ||||||||||    
T  30701612 aaaattttaaattaaaaa 30701595  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 42889697 - 42889564
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    |||||| | |||||||||||||||| ||| |||||||| |||| |  ||| |||||||| || |||||||| |  ||||| ||||||||||| | |||||    
T  42889697 tgtgacgtagcaagtgaggcttatgtgtcattccagatgtccaatggcaaggttatagggactaaatccaaaaacgaaaacttacagagggatgaaattc 42889598  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||||| ||| ||||| || ||||||||||    
T  42889597 aaaaacacgacttagcaaaactttaaattaaaaa 42889564  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 54536582 - 54536449
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    |||||||||| || ||||||||||| ||||||| |||| |||| |   || |||||||  ||||||||||| |  |||||| |||||||||||  |||||    
T  54536582 tgtgacatggaaactgaggcttatgtgtcgttctagatgtccaatggtaaggttatagagaccaaatccaaaaccgaaaatatacagagggaccaaattc 54536483  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||||| | |||||||||| ||||||||||    
T  54536482 aaaaacacgactaaacaaaattttaaattaaaaa 54536449  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 15279450 - 15279395
Alignment:
Q  295 aaatttacagagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||    
T  15279450 aaatttacagagggacgaaattcaaaaacaggaa-taacaaaattttaaattaaaaa 15279395  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 15459819 - 15459764
Alignment:
Q  295 aaatttacagagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||    
T  15459819 aaatttacagagggacgaaattcaaaaacaggaa-taacaaaattttaaattaaaaa 15459764  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 3157923 - 3157792
Alignment:
Q  218 tgtgacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaagattgaaaatttacagagggacgcaattc 317  Q
    |||||| |||||||||||||||||| ||  |||||||| |||| |  ||| |||||||| || || ||||| |   |||| ||||||||||| | |||||    
T  3157923 tgtgacgtggcaagtgaggcttatgtgttattccagatgtcca-tggcaaggttatagggactaa-tccaaaaacaaaaacttacagagggatgaaattc 3157826  T
Q  318 aaaaacacgaattaacaaaatttcaaattaaaaa 351  Q
    |||||||||| ||| ||||| || ||||||||||    
T  3157825 aaaaacacgacttagcaaaactttaaattaaaaa 3157792  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 33469692 - 33469625
Alignment:
Q  221 gacatggcaagtgaggcttatgcgtcgttccagatatccagtaacaatgttataggaaccaaatccaa 288  Q
    ||||||||||||||| |||||| || |||||||||||| |||  ||| |||||||| |||||||||||    
T  33469692 gacatggcaagtgagacttatgtgtagttccagatatctagtggcaaggttatagggaccaaatccaa 33469625  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 1445054 - 1444997
Alignment:
Q  293 gaaaatttacagagggacgcaattcaaaaacacgaattaacaaaatttcaaattaaaa 350  Q
    ||||| ||||||||||||| ||||||||| ||| || | ||||||||| |||||||||    
T  1445054 gaaaaattacagagggacgaaattcaaaatcactaagttacaaaatttgaaattaaaa 1444997  T

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