View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19277_low_20 (Length: 255)

Name: NF19277_low_20
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19277_low_20
NF19277_low_20
[»] chr3 (14 HSPs)
chr3 (11-237)||(6143008-6143234)
chr3 (10-237)||(13269705-13269932)
chr3 (10-206)||(6259889-6260088)
chr3 (10-222)||(6246009-6246224)
chr3 (10-201)||(6169631-6169825)
chr3 (10-200)||(6266414-6266607)
chr3 (85-225)||(6238375-6238518)
chr3 (85-225)||(6590538-6590681)
chr3 (88-163)||(6883300-6883375)
chr3 (74-176)||(8568123-8568225)
chr3 (34-126)||(6721087-6721179)
chr3 (18-149)||(6917899-6918030)
chr3 (117-176)||(8472316-8472375)
chr3 (165-206)||(6900832-6900873)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 6143234 - 6143008
Alignment:
Q  11 cagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgctac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6143234 cagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgctac 6143135  T
Q  111 tgacgcacaacgaaagagcaagatacgacgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggctagagttccgt 210  Q
    ||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6143134 tgacgcacaccgaaaggggaagataagacgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggctagagttccgt 6143035  T
Q  211 gcaggtcaaaaggatgtgctgggattt 237  Q
    |||||||||||||||| ||||||||||    
T  6143034 gcaggtcaaaaggatgcgctgggattt 6143008  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 13269705 - 13269932
Alignment:
Q  10 gcagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgcta 109  Q
    |||||||| ||||||||||||||||||  |||| ||||||||||||||||||| ||| ||| | |||| ||| | ||||||||||||||||| |||| ||    
T  13269705 gcagagactaagcagtaccaaaatcaacgcgtggagaattggcttgatgatgtcagtaatgaggtatacgaattagagcaactattggatgtgattgtta 13269804  T
Q  110 ctgacgcacaacgaaagagcaagatacgacgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggctagagttccg 209  Q
    ||||||||||||||||| | |||||| | || |||||||||||||||||||||||||||||||||||||||||||    |||| ||||||||| ||| |     
T  13269805 ctgacgcacaacgaaaggggaagataagtcgttttctttctgcttttattaatcgatttgaatctagaattaaagcttcgctggagaggctagtgtttct 13269904  T
Q  210 tgcaggtcaaaaggatgtgctgggattt 237  Q
    ||||| || |||| |||  |||||||||    
T  13269905 tgcagatctaaagtatgaactgggattt 13269932  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 6260088 - 6259889
Alignment:
Q  10 gcagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgcta 109  Q
    |||||||||||||||||| |  ||| |  |||||||  ||||||||||||||||||| ||| | |||| ||| |||| |||||||||||||| |||||||    
T  6260088 gcagagacaaagcagtacgaggatctaggcgtgaagtgttggcttgatgatgtgagtaatgaggtatacgaattggaacaactattggatgtcattgcta 6259989  T
Q  110 ctgacgc---acaacgaaagagcaagatacgacgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggctagagtt 206  Q
    |||||||   ||||| |||| | ||||||| |||||||||||| | || ||| ||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  6259988 ctgacgccgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgcttaagaggctagagtt 6259889  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 6246224 - 6246009
Alignment:
Q  10 gcagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgcta 109  Q
    |||||||||||| ||||| | ||||||| ||||||||||||| ||||||||| |||| ||| | |||| ||| | || |||||||||||  | |||||||    
T  6246224 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 6246125  T
Q  110 ctgacgc---acaacgaaagagcaagatacgacgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggctagagtt 206  Q
     ||||||   | ||| |||| | ||||||| |||||||||||| | || ||| ||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  6246124 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 6246025  T
Q  207 ccgtgcaggtcaaaag 222  Q
     | ||||| |||||||    
T  6246024 tcttgcagatcaaaag 6246009  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 6169825 - 6169631
Alignment:
Q  10 gcagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgcta 109  Q
    |||||||||||||||||| |||||| |  ||| ||||||||| |||||||| | ||  ||  | |||| ||||| |||||||| |||||||| |||||||    
T  6169825 gcagagacaaagcagtacgaaaatctagacgtaaagaattgggttgatgatatcaggaataagatatacgaagtagagcaactgttggatgtcattgcta 6169726  T
Q  110 ctgacgc---acaacgaaagagcaagatacgacgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggcta 201  Q
    |||||||   ||||| |||| | ||||||| |||||||||||| | || ||| ||||||||||||||||| ||||||||| || | |||||||||    
T  6169725 ctgacgccgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgatcaagaggcta 6169631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 6266607 - 6266414
Alignment:
Q  10 gcagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgcta 109  Q
    |||||||||||| ||||| | ||||||| ||||||||||||| ||||||||| |||| ||| | |||| ||| | || ||||| |||||  | |||||||    
T  6266607 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactgttggacatcattgcta 6266508  T
Q  110 ctgac---gcacaacgaaagagcaagatacgacgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggct 200  Q
     ||||   ||| | | |||| | ||||||| |||||||||||| | || ||| ||||| ||||||||||| ||||||||| |||| ||||||||    
T  6266507 gtgactctgcaaatcaaaagggaaagatacaacgctttctttcaggttctatcaatcggtttgaatctaggattaaagtattgctcaagaggct 6266414  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 6238518 - 6238375
Alignment:
Q  85 gagcaactattggatgttattgctactgacgc---acaacgaaagagcaagatacgacgctttctttctgcttttattaatcgatttgaatctagaatta 181  Q
    |||||| |||||||||| ||||||||||| ||   ||||| |||| | ||||||| ||||| |||||| | || ||| ||||||||||||||||| ||||    
T  6238518 gagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctatctttcaggttctatcaatcgatttgaatctaggatta 6238419  T
Q  182 aagtaatgctgaagaggctagagttccgtgcaggtcaaaaggat 225  Q
    ||||| |||| |||||| ||||||| | ||||  ||||||||||    
T  6238418 aagtattgctcaagaggttagagtttcttgcaaatcaaaaggat 6238375  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 6590538 - 6590681
Alignment:
Q  85 gagcaactattggatgttattgctactgacgcacaacgaaagagcaagatacgacgctttctttctgcttttattaatc---gatttgaatctagaatta 181  Q
    ||||||||||||||||| ||||||  ||||||||||| |||| ||||||||||||||||||||||   |||||||||||   |||||||| |||| ||||    
T  6590538 gagcaactattggatgtgattgctgatgacgcacaaccaaagggcaagatacgacgctttctttcacgttttattaatcgaggatttgaagctaggatta 6590637  T
Q  182 aagtaatgctgaagaggctagagttccgtgcaggtcaaaaggat 225  Q
    ||| | || |  |||  |||||||| | ||||| ||||||||||    
T  6590638 aagcattgatacagaacctagagtttcttgcagatcaaaaggat 6590681  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 6883375 - 6883300
Alignment:
Q  88 caactattggatgttattgctactgacgcacaacgaaagagcaagatacgacgctttctttctgcttttattaatc 163  Q
    |||||||||||||| ||||| ||||||||||||| || | ||||||||| |||| ||||||| | |||||||||||    
T  6883375 caactattggatgtgattgcgactgacgcacaacaaatgggcaagatacaacgcattctttcaggttttattaatc 6883300  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 8568123 - 8568225
Alignment:
Q  74 tatatgaagtggagcaactattggatgttattgctactgacgcacaacgaaagagcaagatacgacgctttctttctgcttttattaatcgatttgaatc 173  Q
    |||||||||| ||||||||||||||| ||||||||||  | |||||| ||||| | ||||  | || ||| ||||| | ||||| |||||||||||||||    
T  8568123 tatatgaagttgagcaactattggatattattgctaccaatgcacaaagaaagggaaagacgcaacacttcctttcaggttttactaatcgatttgaatc 8568222  T
Q  174 tag 176  Q
    |||    
T  8568223 tag 8568225  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 6721087 - 6721179
Alignment:
Q  34 caaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgctactgacgcacaacgaaag 126  Q
    |||||| |||||| |||||||||| || | |  |||| | |||| ||||| ||||||||||||||||| ||||||||||||  ||||||||||    
T  6721087 caaaccctgaagagttggcttgataatctcaaacatgaggtatacgaagtagagcaactattggatgtgattgctactgacatacaacgaaag 6721179  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 6918030 - 6917899
Alignment:
Q  18 aaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgctactgacgca 117  Q
    ||||||||||||||| | |  |||||||||||||||||||||| | |  || | | |||||||||| || |||||  | ||||| ||| |||||||||||    
T  6918030 aaagcagtaccaaaaccgagacgtgaagaattggcttgatgatctcaaacacgaggtatatgaagtagaccaacttctagatgtgatttctactgacgca 6917931  T
Q  118 caacgaaagagcaagatacgacgctttctttc 149  Q
    |||| |||| ||| ||| | || |||||||||    
T  6917930 caaccaaagggcaggatgcaacactttctttc 6917899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 8472375 - 8472316
Alignment:
Q  117 acaacgaaagagcaagatacgacgctttctttctgcttttattaatcgatttgaatctag 176  Q
    |||||||||||||||| | | || ||| ||||| ||||| ||||||||||||||||||||    
T  8472375 acaacgaaagagcaaggttcaacacttcctttcagctttcattaatcgatttgaatctag 8472316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 6900873 - 6900832
Alignment:
Q  165 atttgaatctagaattaaagtaatgctgaagaggctagagtt 206  Q
    |||||||||||| ||||||||| |||||||||||||| ||||    
T  6900873 atttgaatctaggattaaagtattgctgaagaggctaaagtt 6900832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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