View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19277_low_21 (Length: 255)
Name: NF19277_low_21
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 31321536 - 31321762
Alignment:
| Q |
13 |
attgatgtatttagtttagatttttaaatataagcaagaaaacgtcaaataacattgatgtatctagttcaaaatttcaaatgtttaaccaaccatataa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31321536 |
attgatgtatttagtttagatttttaaatataagcaagaaaaagtcaaataacattgatgtatctggttcaaaatttcaaatgtttaaccaaccatataa |
31321635 |
T |
|
| Q |
113 |
actttgtttgactctacttatttatatcaagagtttttatgtcatgtgcaaatttgctcaccaatataccaaaacataaatttaacaacgaaagttatta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321636 |
actttgtttgactctacttatttatatcaagagtttttctgtcatgtgcaaatttgctcaccaatataccaaaacataaatttaacaacgaaagttatta |
31321735 |
T |
|
| Q |
213 |
cctacctccatttgatcaccaacatta |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31321736 |
cctacctccatttgatcaccaacatta |
31321762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 31329511 - 31329568
Alignment:
| Q |
182 |
caaaacataaatttaacaacgaaagttattacctacctccatttgatcaccaacatta |
239 |
Q |
| |
|
|||||||||| || ||||| |||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
31329511 |
caaaacataatttcaacaatgaaagtcattacctacctccattagatcaccaacatta |
31329568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 54983667 - 54983621
Alignment:
| Q |
193 |
tttaacaacgaaagttattacctacctccatttgatcaccaacatta |
239 |
Q |
| |
|
||||||||| ||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
54983667 |
tttaacaaccaaagttactccgtacctccatttgatcaccaacatta |
54983621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University