View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_low_22 (Length: 253)
Name: NF19277_low_22
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1903465 - 1903703
Alignment:
| Q |
1 |
aaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1903465 |
aaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaaagcaagtg |
1903564 |
T |
|
| Q |
101 |
cttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagatagtcagcaaaactatatattttgacatcaaaattgatatcaaaatt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1903565 |
cttggaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagatagtcagcaaaactatatattttgacatcaaaattgatatcaaaatt |
1903664 |
T |
|
| Q |
201 |
taacgtcaacttaaatggttaacacgattcaaatatctg |
239 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
1903665 |
taacgtcaacttagatggttaacacgattcaaatatctg |
1903703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1907698 - 1907936
Alignment:
| Q |
1 |
aaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1907698 |
aaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaaagcaagtg |
1907797 |
T |
|
| Q |
101 |
cttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagatagtcagcaaaactatatattttgacatcaaaattgatatcaaaatt |
200 |
Q |
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| T |
1907798 |
cttggaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagatagtcagcaaaactatatattttgacatcaaaattgatatcaaaatt |
1907897 |
T |
|
| Q |
201 |
taacgtcaacttaaatggttaacacgattcaaatatctg |
239 |
Q |
| |
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| T |
1907898 |
taacgtcaacttagatggttaacacgattcaaatatctg |
1907936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 1898165 - 1898331
Alignment:
| Q |
1 |
aaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1898165 |
aaagagttcccagatgaactaactctaaccttgctttacaccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtg |
1898264 |
T |
|
| Q |
101 |
cttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagatagtcagcaaaacta |
168 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |||||| ||| |||||||| || ||||||||| |
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| T |
1898265 |
cttggaaaataggactgaatctctcacttatctccattgtttcttctgtaagatactc-gcaaaacta |
1898331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 1913540 - 1913707
Alignment:
| Q |
1 |
aaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | ||| | || |||| ||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
1913540 |
aaagagttcccagatgaactaactttagtcttgatatattccataactgccacaatcatatctacagttgtagctttgttatcagttccaaattcaagtg |
1913639 |
T |
|
| Q |
101 |
cttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagatagtcagcaaaacta |
168 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||| |||||| ||| |||||||| | ||||||||| |
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|
| T |
1913640 |
cttggataataggactaaatctctcacttatctccattgtttcttctgtaagatacactgcaaaacta |
1913707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 1887988 - 1888142
Alignment:
| Q |
1 |
aaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtg |
100 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||||||| |||||||||||| |||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
1887988 |
aaagagttcccagatgaaccaacattagtcttgctttactccattactgccaccatcttatcaacagttgtagcattgttatcagttccaaatgcaagtg |
1888087 |
T |
|
| Q |
101 |
cttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagata |
155 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| |||||| ||| |||||||| |
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| T |
1888088 |
cttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagata |
1888142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 1892836 - 1892990
Alignment:
| Q |
1 |
aaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtg |
100 |
Q |
| |
|
||||||||||| || ||| ||||| || | ||||| ||| ||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
1892836 |
aaagagttccctgacgaagtaactttagtcttgttatacaccattactgccaccatcatatcaacagttgtagcattgttatcagttccaaatgcaagtg |
1892935 |
T |
|
| Q |
101 |
cttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagata |
155 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| |||||| ||| |||||||| |
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|
| T |
1892936 |
cttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagata |
1892990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 1880692 - 1880846
Alignment:
| Q |
1 |
aaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaagtg |
100 |
Q |
| |
|
||||||||| |||||||| ||||| || | ||||| ||| ||| |||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
1880692 |
aaagagttctcagatgaagtaactttagtcttgttatacaccataactgctaccatcatatcaacagttgtagcattgttatcagttccaaatgcaagtg |
1880791 |
T |
|
| Q |
101 |
cttggaaaataggactgaatctctcactcgtctccgttgtttgttcggtaagata |
155 |
Q |
| |
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|||||||||||||||| |||||||||||| |||| | |||| ||| |||||||| |
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| T |
1880792 |
cttggaaaataggactaaatctctcactcatctctatagtttcttctgtaagata |
1880846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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