View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_low_28 (Length: 227)
Name: NF19277_low_28
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 31811121 - 31810899
Alignment:
| Q |
5 |
catttttcagctgcaatgaaggtggagtgagattgattttattcttccacatgtaatttccattcttaggagatgaatcagccaccaatggagacatagg |
104 |
Q |
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| T |
31811121 |
catttttcagctgcaatgaaggtggagtgagattgattttattcttccacatgtaatttccattcttaggagatgaatcagccaccaatggagacatagg |
31811022 |
T |
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| Q |
105 |
tggtgttgaaacatttgaaattggtaatgattcttgtggaggcatagctgaaccagtagaagcatataaaggcctcaactcttcatgtttgtgtgcaaag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31811021 |
tggtgttgaaacatttgaaattggtaatgattcttgtgaaggcatagctgaaccagtagaagcatataaaggcctcaactcttcatgtttgtgtgcaaag |
31810922 |
T |
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| Q |
205 |
aaacacactttcctagtacacct |
227 |
Q |
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||||||||||||||||||||||| |
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| T |
31810921 |
aaacacactttcctagtacacct |
31810899 |
T |
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